Variant report

Variant	rs60480656
Chromosome Location	chr10:97056542-97056543
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97055600..97058139-chr10:97065773..97067717,2	K562	blood:
2	chr10:97055273..97057323-chr10:97068658..97070274,2	K562	blood:
3	chr10:97055747..97058721-chr10:97058965..97061918,2	MCF-7	breast:
4	chr10:97036138..97037977-chr10:97055615..97058500,2	K562	blood:
5	chr10:97054860..97057387-chr10:97070796..97073546,2	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1032097	1.00[EUR][1000 genomes]
rs1032098	1.00[EUR][1000 genomes]
rs11812764	1.00[EUR][1000 genomes]
rs11813834	1.00[EUR][1000 genomes]
rs11814600	1.00[EUR][1000 genomes]
rs11815378	1.00[EUR][1000 genomes]
rs11816316	1.00[EUR][1000 genomes]
rs11817176	1.00[EUR][1000 genomes]
rs11817388	1.00[EUR][1000 genomes]
rs11818486	1.00[EUR][1000 genomes]
rs11819238	1.00[EUR][1000 genomes]
rs2094293	1.00[EUR][1000 genomes]
rs2094294	1.00[EUR][1000 genomes]
rs2860950	1.00[EUR][1000 genomes]
rs2860951	1.00[EUR][1000 genomes]
rs45454292	1.00[EUR][1000 genomes]
rs45487391	1.00[EUR][1000 genomes]
rs45491002	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45495404	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45620737	1.00[EUR][1000 genomes]
rs55740007	1.00[EUR][1000 genomes]
rs55786415	1.00[EUR][1000 genomes]
rs55915838	1.00[EUR][1000 genomes]
rs55937167	1.00[EUR][1000 genomes]
rs56094588	1.00[EUR][1000 genomes]
rs56187632	1.00[EUR][1000 genomes]
rs56264187	1.00[EUR][1000 genomes]
rs56979418	1.00[EUR][1000 genomes]
rs56999073	1.00[EUR][1000 genomes]
rs58512406	1.00[EUR][1000 genomes]
rs58759119	1.00[EUR][1000 genomes]
rs58894719	1.00[EUR][1000 genomes]
rs59277980	1.00[EUR][1000 genomes]
rs59282006	1.00[EUR][1000 genomes]
rs59329992	1.00[EUR][1000 genomes]
rs59485845	1.00[EUR][1000 genomes]
rs60916665	1.00[EUR][1000 genomes]
rs61102040	1.00[EUR][1000 genomes]
rs61478963	1.00[EUR][1000 genomes]
rs61634481	1.00[EUR][1000 genomes]
rs6583982	1.00[EUR][1000 genomes]
rs6583986	1.00[EUR][1000 genomes]
rs7070484	1.00[EUR][1000 genomes]
rs7074994	1.00[EUR][1000 genomes]
rs7085646	1.00[EUR][1000 genomes]
rs7087494	1.00[EUR][1000 genomes]
rs7088962	1.00[EUR][1000 genomes]
rs7090248	1.00[EUR][1000 genomes]
rs7090669	1.00[EUR][1000 genomes]
rs7090961	1.00[EUR][1000 genomes]
rs7091711	1.00[EUR][1000 genomes]
rs7093626	1.00[EUR][1000 genomes]
rs7100479	1.00[EUR][1000 genomes]
rs74150766	1.00[EUR][1000 genomes]
rs74150767	1.00[EUR][1000 genomes]
rs74150768	1.00[EUR][1000 genomes]
rs74150772	1.00[EUR][1000 genomes]
rs74150780	1.00[EUR][1000 genomes]
rs74150781	1.00[EUR][1000 genomes]
rs74150782	1.00[EUR][1000 genomes]
rs74150785	1.00[EUR][1000 genomes]
rs74150786	1.00[EUR][1000 genomes]
rs74150790	1.00[EUR][1000 genomes]
rs74150792	1.00[EUR][1000 genomes]
rs74150793	1.00[EUR][1000 genomes]
rs74150795	1.00[EUR][1000 genomes]
rs7894207	1.00[EUR][1000 genomes]
rs7910365	1.00[EUR][1000 genomes]
rs7912439	1.00[EUR][1000 genomes]
rs7915255	1.00[EUR][1000 genomes]
rs7918727	1.00[EUR][1000 genomes]
rs7918803	1.00[EUR][1000 genomes]
rs7919415	1.00[EUR][1000 genomes]
rs7923670	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv552021	chr10:97053404-97071334	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97051200-97056800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:97055400-97056800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr10:97055400-97060000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr10:97055600-97056600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
5	chr10:97055600-97056800	Weak transcription	Left Ventricle	heart
6	chr10:97055600-97056800	Enhancers	K562	blood
7	chr10:97055600-97057000	Weak transcription	Right Atrium	heart
8	chr10:97055600-97057000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr10:97055600-97057200	Weak transcription	Psoas Muscle	Psoas
10	chr10:97055600-97057600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:97055600-97057800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:97055600-97057800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:97055600-97058000	Enhancers	Primary B cells from peripheral blood	blood
14	chr10:97055600-97063400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr10:97055600-97072800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:97055800-97057000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr10:97055800-97057000	Weak transcription	Spleen	Spleen
18	chr10:97055800-97057400	Enhancers	Primary hematopoietic stem cells	blood
19	chr10:97055800-97058000	Enhancers	Primary B cells from cord blood	blood
20	chr10:97055800-97058000	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr10:97055800-97063200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr10:97055800-97063200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:97055800-97063200	Weak transcription	Lung	lung
24	chr10:97055800-97063400	Weak transcription	NHEK	skin
25	chr10:97055800-97063800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr10:97055800-97067600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr10:97056200-97060000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr10:97056400-97056600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr10:97056400-97056800	Enhancers	GM12878-XiMat	blood
30	chr10:97056400-97057000	Weak transcription	Fetal Thymus	thymus
31	chr10:97056400-97057800	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr10:97056400-97057800	Enhancers	Right Ventricle	heart
33	chr10:97056400-97058200	Enhancers	Fetal Heart	heart

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