Variant report

Variant	rs7894207
Chromosome Location	chr10:96991295-96991296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr10:96989981-96991587	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr10:96989084-96991483	H1-hESC	embryonic stem cell:	n/a	n/a
3	TEAD4	chr10:96990536-96991328	H1-hESC	embryonic stem cell:	n/a	n/a
4	TEAD4	chr10:96989851-96991357	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr10:96991092-96991761	H1-hESC	embryonic stem cell:	n/a	n/a
6	TBP	chr10:96988973-96991592	H1-hESC	embryonic stem cell:	n/a	n/a
7	YY1	chr10:96989916-96991410	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr10:96991094-96991464	H1-hESC	embryonic stem cell:	n/a	n/a
9	ATF2	chr10:96989170-96991319	H1-hESC	embryonic stem cell:	n/a	n/a
10	POLR2A	chr10:96990687-96991829	K562	blood:	n/a	n/a
11	POLR2A	chr10:96988854-96991765	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96941976..96944883-chr10:96989765..96992078,3	MCF-7	breast:
2	chr10:96943335..96943883-chr10:96990715..96991433,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000234026	TF binding region
ENSG00000225533	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1032097	1.00[EUR][1000 genomes]
rs1032098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11572073	1.00[EUR][1000 genomes]
rs11572081	1.00[EUR][1000 genomes]
rs11572089	1.00[EUR][1000 genomes]
rs11572132	1.00[EUR][1000 genomes]
rs11572145	1.00[EUR][1000 genomes]
rs11572148	1.00[EUR][1000 genomes]
rs11572176	1.00[EUR][1000 genomes]
rs11812764	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11813834	1.00[EUR][1000 genomes]
rs11814600	1.00[EUR][1000 genomes]
rs11815378	1.00[EUR][1000 genomes]
rs11816316	1.00[EUR][1000 genomes]
rs11816732	1.00[EUR][1000 genomes]
rs11817176	1.00[EUR][1000 genomes]
rs11817388	1.00[EUR][1000 genomes]
rs11818486	1.00[EUR][1000 genomes]
rs11819238	1.00[EUR][1000 genomes]
rs2094293	1.00[EUR][1000 genomes]
rs2094294	1.00[EUR][1000 genomes]
rs2860950	1.00[EUR][1000 genomes]
rs2860951	1.00[EUR][1000 genomes]
rs45454292	1.00[EUR][1000 genomes]
rs45487391	1.00[EUR][1000 genomes]
rs45491002	1.00[EUR][1000 genomes]
rs45495404	1.00[EUR][1000 genomes]
rs45620737	1.00[EUR][1000 genomes]
rs55700247	1.00[EUR][1000 genomes]
rs55740007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55786415	1.00[EUR][1000 genomes]
rs55915838	1.00[EUR][1000 genomes]
rs55937167	1.00[EUR][1000 genomes]
rs56094588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56187632	1.00[EUR][1000 genomes]
rs56264187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56412102	1.00[EUR][1000 genomes]
rs56979418	1.00[EUR][1000 genomes]
rs56999073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58894719	1.00[EUR][1000 genomes]
rs59277980	1.00[EUR][1000 genomes]
rs59282006	1.00[EUR][1000 genomes]
rs59329992	1.00[EUR][1000 genomes]
rs59485845	1.00[EUR][1000 genomes]
rs60480656	1.00[EUR][1000 genomes]
rs60916665	1.00[EUR][1000 genomes]
rs61478963	1.00[EUR][1000 genomes]
rs61634481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6583982	1.00[EUR][1000 genomes]
rs6583986	1.00[EUR][1000 genomes]
rs7070484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7074994	1.00[EUR][1000 genomes]
rs7078505	1.00[EUR][1000 genomes]
rs7083576	1.00[EUR][1000 genomes]
rs7083837	1.00[EUR][1000 genomes]
rs7084045	1.00[EUR][1000 genomes]
rs7085646	1.00[EUR][1000 genomes]
rs7087494	1.00[EUR][1000 genomes]
rs7088962	1.00[EUR][1000 genomes]
rs7090248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7090669	1.00[EUR][1000 genomes]
rs7090961	1.00[EUR][1000 genomes]
rs7091711	1.00[EUR][1000 genomes]
rs7093626	1.00[EUR][1000 genomes]
rs7100479	1.00[EUR][1000 genomes]
rs74150750	1.00[EUR][1000 genomes]
rs74150764	1.00[EUR][1000 genomes]
rs74150766	1.00[EUR][1000 genomes]
rs74150767	1.00[EUR][1000 genomes]
rs74150768	1.00[EUR][1000 genomes]
rs74150772	1.00[EUR][1000 genomes]
rs74150780	1.00[EUR][1000 genomes]
rs74150781	1.00[EUR][1000 genomes]
rs74150782	1.00[EUR][1000 genomes]
rs74150785	1.00[EUR][1000 genomes]
rs74150786	1.00[EUR][1000 genomes]
rs74150790	1.00[EUR][1000 genomes]
rs74150792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7915255	1.00[EUR][1000 genomes]
rs7918727	1.00[EUR][1000 genomes]
rs7918803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7919415	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv21432	chr10:96856006-96996043	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv1834151	chr10:96925446-96992955	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96970200-96992400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:96989800-96991600	Active TSS	H9 Cell Line	embryonic stem cell
3	chr10:96990000-96991400	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr10:96990000-96991400	Active TSS	iPS-18 Cell Line	embryonic stem cell
5	chr10:96990000-96991600	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr10:96990000-96995400	Weak transcription	K562	blood
7	chr10:96990000-96995800	Weak transcription	HepG2	liver
8	chr10:96990200-96991400	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr10:96990200-96991600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:96990600-96991800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:96990600-96992400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr10:96990600-96994800	Weak transcription	Hela-S3	cervix
13	chr10:96990800-96991600	Active TSS	HUES64 Cell Line	embryonic stem cell
14	chr10:96990800-96992200	Weak transcription	HSMMtube	muscle
15	chr10:96990800-96992400	Weak transcription	Aorta	Aorta
16	chr10:96990800-96992400	Weak transcription	NHLF	lung
17	chr10:96990800-96992600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:96990800-96993000	Weak transcription	NHDF-Ad	bronchial
19	chr10:96990800-96993200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr10:96990800-96994600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:96990800-96994800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr10:96990800-96995200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr10:96990800-96997400	Weak transcription	Stomach Mucosa	stomach
24	chr10:96990800-97005200	Weak transcription	Psoas Muscle	Psoas
25	chr10:96991000-96991400	Enhancers	H1 Cell Line	embryonic stem cell
26	chr10:96991000-96991400	Active TSS	HUES48 Cell Line	embryonic stem cell
27	chr10:96991000-96991400	Enhancers	Primary B cells from peripheral blood	blood
28	chr10:96991000-96991400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr10:96991000-96991600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr10:96991000-96991600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
31	chr10:96991000-96991600	Enhancers	GM12878-XiMat	blood
32	chr10:96991000-96992000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr10:96991000-96992000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr10:96991000-96992000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr10:96991000-96992000	Weak transcription	Duodenum Mucosa	Duodenum
36	chr10:96991000-96992200	Weak transcription	Liver	Liver
37	chr10:96991000-96992200	Weak transcription	HSMM	muscle
38	chr10:96991000-96992200	Weak transcription	NHEK	skin
39	chr10:96991000-96992400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr10:96991000-96992400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr10:96991000-96992400	Weak transcription	Adipose Nuclei	Adipose
42	chr10:96991000-96992400	Weak transcription	Esophagus	oesophagus
43	chr10:96991000-96992400	Weak transcription	Fetal Intestine Small	intestine
44	chr10:96991000-96992400	Weak transcription	Fetal Stomach	stomach
45	chr10:96991000-96992400	Weak transcription	Left Ventricle	heart
46	chr10:96991000-96992400	Weak transcription	Lung	lung
47	chr10:96991000-96992400	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr10:96991000-96992400	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr10:96991000-96992400	Weak transcription	Spleen	Spleen
50	chr10:96991000-96992400	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links