Variant report

Variant	rs55700247
Chromosome Location	chr10:96814259-96814260
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs1032097	1.00[EUR][1000 genomes]
rs1032098	1.00[EUR][1000 genomes]
rs11572073	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11572081	1.00[EUR][1000 genomes]
rs11572089	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11572132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11572145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11572148	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11572176	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11812764	1.00[EUR][1000 genomes]
rs11813834	1.00[EUR][1000 genomes]
rs11814600	1.00[EUR][1000 genomes]
rs11815378	1.00[EUR][1000 genomes]
rs11816316	1.00[EUR][1000 genomes]
rs11816732	1.00[EUR][1000 genomes]
rs11817176	1.00[EUR][1000 genomes]
rs11817388	1.00[EUR][1000 genomes]
rs11818486	1.00[EUR][1000 genomes]
rs11819238	1.00[EUR][1000 genomes]
rs2094293	1.00[EUR][1000 genomes]
rs2094294	1.00[EUR][1000 genomes]
rs2860950	1.00[EUR][1000 genomes]
rs2860951	1.00[EUR][1000 genomes]
rs45454292	1.00[EUR][1000 genomes]
rs55740007	1.00[EUR][1000 genomes]
rs55786415	1.00[EUR][1000 genomes]
rs55915838	1.00[EUR][1000 genomes]
rs55937167	1.00[EUR][1000 genomes]
rs56094588	1.00[EUR][1000 genomes]
rs56187632	1.00[EUR][1000 genomes]
rs56264187	1.00[EUR][1000 genomes]
rs56412102	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56979418	1.00[EUR][1000 genomes]
rs56999073	1.00[EUR][1000 genomes]
rs58894719	1.00[EUR][1000 genomes]
rs59277980	1.00[EUR][1000 genomes]
rs59329992	1.00[EUR][1000 genomes]
rs59485845	1.00[EUR][1000 genomes]
rs59533405	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60916665	1.00[EUR][1000 genomes]
rs61478963	1.00[EUR][1000 genomes]
rs61634481	1.00[EUR][1000 genomes]
rs6583982	1.00[EUR][1000 genomes]
rs6583986	1.00[EUR][1000 genomes]
rs7070484	1.00[EUR][1000 genomes]
rs7074994	1.00[EUR][1000 genomes]
rs7078505	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7083576	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7083837	1.00[EUR][1000 genomes]
rs7084045	1.00[EUR][1000 genomes]
rs7085646	1.00[EUR][1000 genomes]
rs7087494	1.00[EUR][1000 genomes]
rs7088962	1.00[EUR][1000 genomes]
rs7090248	1.00[EUR][1000 genomes]
rs7090669	1.00[EUR][1000 genomes]
rs7090961	1.00[EUR][1000 genomes]
rs7091711	1.00[EUR][1000 genomes]
rs7093626	1.00[EUR][1000 genomes]
rs7100479	1.00[EUR][1000 genomes]
rs74150750	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150764	1.00[EUR][1000 genomes]
rs74150766	1.00[EUR][1000 genomes]
rs74150767	1.00[EUR][1000 genomes]
rs74150768	1.00[EUR][1000 genomes]
rs74150772	1.00[EUR][1000 genomes]
rs74150780	1.00[EUR][1000 genomes]
rs74150781	1.00[EUR][1000 genomes]
rs74150782	1.00[EUR][1000 genomes]
rs74150785	1.00[EUR][1000 genomes]
rs74150786	1.00[EUR][1000 genomes]
rs74150790	1.00[EUR][1000 genomes]
rs74150792	1.00[EUR][1000 genomes]
rs74150793	1.00[EUR][1000 genomes]
rs74150795	1.00[EUR][1000 genomes]
rs7894207	1.00[EUR][1000 genomes]
rs7915255	1.00[EUR][1000 genomes]
rs7918727	1.00[EUR][1000 genomes]
rs7918803	1.00[EUR][1000 genomes]
rs7919415	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1035409	chr10:96495177-96832057	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1050544	chr10:96766934-96814689	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv1044182	chr10:96783996-96814689	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	esv2761618	chr10:96784008-96814689	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv467436	chr10:96805371-96862286	Genic enhancers Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
8	nsv551964	chr10:96805371-96862286	ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96805400-96823600	Weak transcription	Pancreas	Pancrea
2	chr10:96813800-96814600	Genic enhancers	Liver	Liver

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