Variant report

Variant	rs7093626
Chromosome Location	chr10:96894373-96894374
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs1032097	1.00[EUR][1000 genomes]
rs1032098	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs11572073	1.00[ASW][hapmap];1.00[EUR][1000 genomes]
rs11572081	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];0.86[YRI][hapmap];1.00[EUR][1000 genomes]
rs11572089	1.00[ASW][hapmap];1.00[EUR][1000 genomes]
rs11572132	1.00[EUR][1000 genomes]
rs11572145	1.00[ASW][hapmap];1.00[EUR][1000 genomes]
rs11572148	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];0.86[YRI][hapmap];1.00[EUR][1000 genomes]
rs11572176	1.00[ASW][hapmap];1.00[EUR][1000 genomes]
rs11812764	1.00[EUR][1000 genomes]
rs11813834	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11814600	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11815378	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11816316	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11816732	1.00[EUR][1000 genomes]
rs11817176	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11817388	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818420	0.89[AMR][1000 genomes]
rs11818486	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11819238	1.00[EUR][1000 genomes]
rs2094293	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2094294	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2860950	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2860951	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45454292	1.00[EUR][1000 genomes]
rs45487391	1.00[EUR][1000 genomes]
rs45491002	1.00[EUR][1000 genomes]
rs45495404	1.00[EUR][1000 genomes]
rs45620737	1.00[EUR][1000 genomes]
rs55700247	1.00[EUR][1000 genomes]
rs55740007	1.00[EUR][1000 genomes]
rs55786415	1.00[EUR][1000 genomes]
rs55915838	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55937167	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56094588	1.00[EUR][1000 genomes]
rs56187632	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56264187	1.00[EUR][1000 genomes]
rs56412102	1.00[EUR][1000 genomes]
rs56979418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56999073	1.00[EUR][1000 genomes]
rs58894719	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59277980	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59282006	1.00[EUR][1000 genomes]
rs59329992	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59485845	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59533405	1.00[EUR][1000 genomes]
rs60480656	1.00[EUR][1000 genomes]
rs60916665	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61478963	1.00[EUR][1000 genomes]
rs61634481	1.00[EUR][1000 genomes]
rs6583982	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6583986	1.00[EUR][1000 genomes]
rs7070484	1.00[EUR][1000 genomes]
rs7074994	1.00[EUR][1000 genomes]
rs7078505	1.00[EUR][1000 genomes]
rs7083576	1.00[ASW][hapmap];1.00[EUR][1000 genomes]
rs7083837	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7084045	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7085646	1.00[EUR][1000 genomes]
rs7087494	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7088962	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7090248	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs7090669	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7090961	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7091711	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7100479	1.00[EUR][1000 genomes]
rs74150750	1.00[EUR][1000 genomes]
rs74150764	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150766	1.00[EUR][1000 genomes]
rs74150767	1.00[EUR][1000 genomes]
rs74150768	1.00[EUR][1000 genomes]
rs74150772	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150780	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150781	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150782	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150785	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150786	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150790	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150792	1.00[EUR][1000 genomes]
rs74150793	1.00[EUR][1000 genomes]
rs74150795	1.00[EUR][1000 genomes]
rs7894207	1.00[EUR][1000 genomes]
rs7915255	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7918727	1.00[EUR][1000 genomes]
rs7918803	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs7919415	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv21432	chr10:96856006-96996043	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv551985	chr10:96870565-96920198	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96890000-96896800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:96890000-96897800	Weak transcription	Brain Angular Gyrus	brain
3	chr10:96890600-96904400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:96890800-96894600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr10:96891200-96902400	Weak transcription	Aorta	Aorta
6	chr10:96891600-96895800	Weak transcription	Fetal Intestine Large	intestine
7	chr10:96892800-96896200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
8	chr10:96893000-96903800	Weak transcription	Pancreas	Pancrea
9	chr10:96893400-96895600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:96893400-96900600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr10:96893400-96901000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr10:96893600-96898400	Weak transcription	Liver	Liver
13	chr10:96893800-96896400	Weak transcription	HepG2	liver
14	chr10:96894000-96906600	Weak transcription	Primary B cells from cord blood	blood
15	chr10:96894200-96897400	Weak transcription	H9 Cell Line	embryonic stem cell

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