Variant report

Variant	rs58512406
Chromosome Location	chr10:97227714-97227715
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97220624..97225860-chr10:97227541..97231131,6	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs45454292	1.00[EUR][1000 genomes]
rs45487391	1.00[EUR][1000 genomes]
rs45491002	1.00[EUR][1000 genomes]
rs45495404	1.00[EUR][1000 genomes]
rs45620737	1.00[EUR][1000 genomes]
rs57262490	0.87[AMR][1000 genomes]
rs58759119	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59282006	1.00[EUR][1000 genomes]
rs60184686	0.87[AMR][1000 genomes]
rs60480656	1.00[EUR][1000 genomes]
rs61102040	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150908	0.87[AMR][1000 genomes]
rs7910365	1.00[EUR][1000 genomes]
rs7912439	1.00[EUR][1000 genomes]
rs7923670	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045002	chr10:97214418-97250630	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97213200-97234200	Weak transcription	Colonic Mucosa	Colon
2	chr10:97216000-97228200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr10:97218000-97229600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:97219800-97229600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:97220600-97232000	Enhancers	Fetal Heart	heart
6	chr10:97223200-97228000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr10:97223200-97229600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:97223200-97230200	Enhancers	Fetal Brain Male	brain
9	chr10:97223200-97234000	Weak transcription	Ovary	ovary
10	chr10:97223600-97229200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:97224000-97229600	Weak transcription	Lung	lung
12	chr10:97224600-97229400	Weak transcription	Aorta	Aorta
13	chr10:97224800-97229400	Weak transcription	Brain Hippocampus Middle	brain
14	chr10:97224800-97229600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:97224800-97237000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:97225000-97227800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr10:97225000-97228000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr10:97225000-97228200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:97225000-97228400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr10:97225000-97228600	Weak transcription	Brain Substantia Nigra	brain
21	chr10:97225000-97229200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr10:97225000-97229600	Weak transcription	Brain Angular Gyrus	brain
23	chr10:97226200-97227800	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr10:97226200-97228800	Enhancers	Brain Cingulate Gyrus	brain
25	chr10:97226200-97230200	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr10:97226200-97236000	Enhancers	HepG2	liver
27	chr10:97226400-97228000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr10:97226400-97228600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr10:97226400-97229600	Enhancers	Placenta	Placenta
30	chr10:97226400-97230400	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr10:97226400-97230600	Enhancers	Fetal Intestine Large	intestine
32	chr10:97226400-97232200	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr10:97226400-97232200	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr10:97226400-97232200	Enhancers	Colon Smooth Muscle	Colon
35	chr10:97226400-97232400	Enhancers	Rectal Smooth Muscle	rectum
36	chr10:97226400-97236800	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr10:97226400-97242600	Enhancers	Fetal Intestine Small	intestine
38	chr10:97226600-97228400	Enhancers	Fetal Stomach	stomach
39	chr10:97226600-97230400	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr10:97226800-97228200	Enhancers	Duodenum Smooth Muscle	Duodenum
41	chr10:97226800-97229200	Weak transcription	Fetal Kidney	kidney
42	chr10:97226800-97230400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr10:97226800-97230400	Enhancers	Fetal Brain Female	brain
44	chr10:97226800-97234600	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr10:97227000-97228000	Enhancers	Esophagus	oesophagus
46	chr10:97227000-97228200	Enhancers	Left Ventricle	heart
47	chr10:97227000-97228600	Enhancers	Fetal Muscle Trunk	muscle
48	chr10:97227000-97228800	Enhancers	Pancreas	Pancrea
49	chr10:97227000-97228800	Enhancers	Right Ventricle	heart
50	chr10:97227000-97229600	Enhancers	Stomach Smooth Muscle	stomach

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