Variant report

Variant	rs60184686
Chromosome Location	chr10:97205245-97205246
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:97205040-97205287	HUVEC	blood vessel:	n/a	n/a
2	NFIC	chr10:97204965-97205493	SK-N-SH	brain:	n/a	n/a
3	CTCF	chr10:97205140-97205290	HMEC	breast:	n/a	n/a
4	CTCF	chr10:97204732-97206132	A549	lung:	n/a	chr10:97205802-97205810 chr10:97205797-97205815 chr10:97205798-97205814 chr10:97205792-97205813
5	CTCF	chr10:97205220-97205370	GM12870	blood:	n/a	n/a
6	CTCF	chr10:97205200-97205350	GM12864	blood:	n/a	n/a
7	JUND	chr10:97204979-97205513	SK-N-SH	brain:	n/a	n/a
8	CTCF	chr10:97205220-97205370	HCFaa	heart:	n/a	n/a
9	CTCF	chr10:97205220-97205370	BJ	skin:	n/a	n/a
10	CTCF	chr10:97205100-97205250	GM12874	blood:	n/a	n/a
11	FOS	chr10:97205028-97205984	MCF10A-Er-Src	breast:	n/a	n/a
12	CTCF	chr10:97205240-97205390	SK-N-SH_RA	brain:	n/a	n/a
13	TEAD4	chr10:97204959-97205538	HCT-116	colon:	n/a	n/a
14	CTCF	chr10:97205160-97205310	HPAF	blood vessel:	n/a	n/a
15	CTCF	chr10:97205220-97205370	RPTEC	kidney:	n/a	n/a
16	TEAD4	chr10:97204873-97206203	ECC-1	luminal epithelium:	n/a	chr10:97205976-97205985
17	FOSL2	chr10:97204988-97205479	SK-N-SH	brain:	n/a	n/a
18	FOS	chr10:97204784-97205436	HUVEC	blood vessel:	n/a	n/a
19	TEAD4	chr10:97204963-97205444	ECC-1	luminal epithelium:	n/a	n/a
20	FOSL2	chr10:97205021-97205361	A549	lung:	n/a	n/a
21	CTCF	chr10:97205200-97205350	AoAF	blood vessel:	n/a	n/a
22	CTCF	chr10:97205240-97205390	A549	lung:	n/a	n/a
23	CTCF	chr10:97205200-97205350	HEEpiC	esophagus:	n/a	n/a
24	FOS	chr10:97205054-97205362	MCF10A-Er-Src	breast:	n/a	n/a
25	FOSL2	chr10:97204915-97205511	A549	lung:	n/a	n/a
26	MYC	chr10:97205145-97205353	MCF10A-Er-Src	breast:	n/a	n/a
27	CTCF	chr10:97205080-97206221	SK-N-SH	brain:	n/a	chr10:97205802-97205810 chr10:97205797-97205815 chr10:97205798-97205814 chr10:97205792-97205813
28	STAT3	chr10:97205083-97205338	MCF10A-Er-Src	breast:	n/a	n/a
29	NFIC	chr10:97204806-97206134	SK-N-SH	brain:	n/a	chr10:97205771-97205787 chr10:97205770-97205787
30	NFIC	chr10:97204823-97206176	ECC-1	luminal epithelium:	n/a	chr10:97205771-97205787 chr10:97205770-97205787
31	CTCF	chr10:97205220-97205370	AoAF	blood vessel:	n/a	n/a
32	YY1	chr10:97205047-97205258	HCT-116	colon:	n/a	n/a
33	FOS	chr10:97205043-97205363	MCF10A-Er-Src	breast:	n/a	n/a
34	CTCF	chr10:97205184-97205280	Kidney_OC	kidney:	n/a	n/a
35	FOS	chr10:97205035-97205363	MCF10A-Er-Src	breast:	n/a	n/a
36	NFIC	chr10:97204859-97206090	ECC-1	luminal epithelium:	n/a	chr10:97205771-97205787 chr10:97205770-97205787

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97205231..97206125-chr10:97360638..97361145,2	MCF-7	breast:
2	chr10:97204685..97206327-chr10:97285189..97287313,2	K562	blood:

Variant related genes	Relation type
SORBS1	TF binding region

rs_ID	r²[population]
rs57262490	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58512406	0.87[AMR][1000 genomes]
rs58759119	0.87[AMR][1000 genomes]
rs60712346	1.00[EUR][1000 genomes]
rs74150908	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7912439	0.89[AMR][1000 genomes]
rs7923670	0.89[AMR][1000 genomes]

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97171000-97208000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr10:97187200-97205400	Weak transcription	K562	blood
3	chr10:97190200-97207200	Weak transcription	Colonic Mucosa	Colon
4	chr10:97190800-97208200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr10:97193400-97210800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:97193800-97208000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:97197600-97207400	Weak transcription	Brain Hippocampus Middle	brain
8	chr10:97197600-97207600	Weak transcription	Brain Germinal Matrix	brain
9	chr10:97198400-97207600	Weak transcription	Fetal Brain Female	brain
10	chr10:97198800-97205800	Enhancers	Rectal Smooth Muscle	rectum
11	chr10:97200200-97208800	Enhancers	Colon Smooth Muscle	Colon
12	chr10:97200800-97206800	Enhancers	HepG2	liver
13	chr10:97201400-97207400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:97201600-97207400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:97202400-97205800	Weak transcription	Fetal Intestine Large	intestine
16	chr10:97202800-97209200	Enhancers	Fetal Muscle Leg	muscle
17	chr10:97203200-97208400	Enhancers	Liver	Liver
18	chr10:97203800-97209400	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr10:97204000-97205600	Enhancers	Psoas Muscle	Psoas
20	chr10:97204000-97208600	Enhancers	Left Ventricle	heart
21	chr10:97204200-97206000	Enhancers	Brain Anterior Caudate	brain
22	chr10:97204400-97206000	Enhancers	Fetal Brain Male	brain
23	chr10:97204400-97206400	Enhancers	Brain Angular Gyrus	brain
24	chr10:97204600-97205400	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr10:97204600-97206000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr10:97204600-97206000	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr10:97204600-97206000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr10:97204600-97206200	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr10:97204600-97206200	Enhancers	HMEC	breast
30	chr10:97204600-97206400	Enhancers	Brain Cingulate Gyrus	brain
31	chr10:97204600-97208200	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr10:97204600-97208200	Enhancers	Placenta	Placenta
33	chr10:97204600-97208200	Enhancers	Lung	lung
34	chr10:97204600-97208600	Enhancers	Adipose Nuclei	Adipose
35	chr10:97204600-97208600	Enhancers	Fetal Stomach	stomach
36	chr10:97204600-97208800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr10:97204800-97205400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr10:97204800-97205400	Enhancers	Fetal Muscle Trunk	muscle
39	chr10:97204800-97205600	Flanking Active TSS	Stomach Smooth Muscle	stomach
40	chr10:97204800-97205600	Enhancers	Spleen	Spleen
41	chr10:97204800-97205600	Enhancers	NHLF	lung
42	chr10:97204800-97205800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr10:97204800-97205800	Enhancers	NH-A	brain
44	chr10:97204800-97206000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr10:97204800-97206000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr10:97204800-97206000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr10:97204800-97206000	Enhancers	Brain Substantia Nigra	brain
48	chr10:97204800-97206000	Enhancers	Duodenum Mucosa	Duodenum
49	chr10:97204800-97206000	Enhancers	Gastric	stomach
50	chr10:97204800-97206000	Enhancers	Sigmoid Colon	Sigmoid Colon

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