Variant report
Variant | nsv1047304 |
---|---|
Chromosome Location | chr14:19562127-20407630 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:4491)
- CpG islands (count:4705)
- Chromatin interactive region (count:4)
- LncRNA region (count:240)
- Mature miRNA region (count: 0)
- miRNA target sites (count:1)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr14:20387153-20387455 | HepG2 | liver: | n/a | n/a |
2 | ARID3A | chr14:20346241-20346527 | K562 | blood: | n/a | n/a |
3 | ARID3A | chr14:19614565-19614964 | K562 | blood: | n/a | n/a |
4 | ARID3A | chr14:20346227-20346537 | HepG2 | liver: | n/a | n/a |
5 | ATF1 | chr14:20374096-20374405 | K562 | blood: | n/a | n/a |
6 | ATF1 | chr14:20325048-20325100 | K562 | blood: | n/a | n/a |
7 | ATF1 | chr14:19610591-19610826 | K562 | blood: | n/a | n/a |
8 | ATF1 | chr14:19792967-19794009 | K562 | blood: | n/a | n/a |
9 | ATF1 | chr14:19795048-19796237 | K562 | blood: | n/a | n/a |
10 | ATF1 | chr14:19614523-19614771 | K562 | blood: | n/a | n/a |
11 | ATF1 | chr14:19697695-19697910 | K562 | blood: | n/a | n/a |
12 | ATF1 | chr14:19609027-19609227 | K562 | blood: | n/a | n/a |
13 | ATF1 | chr14:20388271-20388560 | K562 | blood: | n/a | n/a |
14 | ATF1 | chr14:19619825-19620010 | K562 | blood: | n/a | n/a |
15 | ATF1 | chr14:20319622-20319703 | K562 | blood: | n/a | n/a |
16 | ATF3 | chr14:19614578-19614850 | K562 | blood: | n/a | n/a |
17 | BACH1 | chr14:19614506-19614753 | K562 | blood: | n/a | n/a |
18 | BACH1 | chr14:19608951-19609223 | K562 | blood: | n/a | n/a |
19 | BACH1 | chr14:20348120-20348235 | K562 | blood: | n/a | n/a |
20 | BACH1 | chr14:19795663-19796213 | K562 | blood: | n/a | n/a |
21 | BATF | chr14:19921485-19921738 | GM12878 | blood: | n/a | n/a |
22 | BATF | chr14:19637495-19637851 | GM12878 | blood: | n/a | chr14:19637679-19637690 |
23 | BATF | chr14:19986920-19987123 | GM12878 | blood: | n/a | n/a |
24 | BATF | chr14:20131255-20131487 | GM12878 | blood: | n/a | n/a |
25 | BATF | chr14:19937525-19937845 | GM12878 | blood: | n/a | chr14:19937698-19937709 |
26 | BATF | chr14:20026256-20026650 | GM12878 | blood: | n/a | n/a |
27 | BATF | chr14:19937503-19937859 | GM12878 | blood: | n/a | chr14:19937698-19937709 |
28 | BATF | chr14:19748478-19748726 | GM12878 | blood: | n/a | n/a |
29 | BATF | chr14:20025214-20025459 | GM12878 | blood: | n/a | n/a |
30 | BATF | chr14:19653590-19653843 | GM12878 | blood: | n/a | n/a |
31 | BATF | chr14:20025031-20025541 | GM12878 | blood: | n/a | n/a |
32 | BATF | chr14:20085953-20086237 | GM12878 | blood: | n/a | n/a |
33 | BATF | chr14:19827024-19827305 | GM12878 | blood: | n/a | n/a |
34 | BATF | chr14:20031700-20032016 | GM12878 | blood: | n/a | n/a |
35 | BATF | chr14:19586478-19586681 | GM12878 | blood: | n/a | n/a |
36 | BATF | chr14:19637509-19637829 | GM12878 | blood: | n/a | chr14:19637679-19637690 |
37 | BCL11A | chr14:19746165-19746357 | GM12878 | blood: | n/a | n/a |
38 | BCL11A | chr14:19747489-19747677 | GM12878 | blood: | n/a | n/a |
39 | BCL11A | chr14:19654370-19654535 | GM12878 | blood: | n/a | n/a |
40 | BCL11A | chr14:20025076-20025493 | GM12878 | blood: | n/a | chr14:20025351-20025360 |
41 | BCL11A | chr14:19937603-19937812 | GM12878 | blood: | n/a | n/a |
42 | BCL11A | chr14:19776347-19776520 | GM12878 | blood: | n/a | n/a |
43 | BCL11A | chr14:19753894-19754206 | GM12878 | blood: | n/a | n/a |
44 | BCL11A | chr14:19747728-19747905 | GM12878 | blood: | n/a | n/a |
45 | BCL11A | chr14:19748843-19749025 | GM12878 | blood: | n/a | n/a |
46 | BCL11A | chr14:19637542-19637751 | GM12878 | blood: | n/a | n/a |
47 | BCL11A | chr14:19921178-19921362 | GM12878 | blood: | n/a | n/a |
48 | BCL11A | chr14:19826185-19826607 | GM12878 | blood: | n/a | n/a |
49 | BCL11A | chr14:20084307-20084477 | GM12878 | blood: | n/a | n/a |
50 | BCL11A | chr14:19829015-19829207 | GM12878 | blood: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr14:19594171-19594221 | SKMC | muscle: | n/a |
2 | chr14:19858845-19858895 | ECC-1 | luminal epithelium: | n/a |
3 | chr14:19855113-19855163 | HMEC | breast: | n/a |
4 | chr14:19585143-19585193 | HPAEpiC | pulmonary alveolar: | n/a |
5 | chr14:20295005-20295055 | HUVEC | blood vessel: | n/a |
6 | chr14:19747134-19747184 | AG09319 | gingival: | n/a |
7 | chr14:20404281-20404331 | PFSK-1 | brain: | n/a |
8 | chr14:19643599-19643649 | A549 | lung: | n/a |
9 | chr14:19594171-19594221 | SKMC | muscle: | n/a |
10 | chr14:19858845-19858895 | ECC-1 | luminal epithelium: | n/a |
11 | chr14:19855113-19855163 | HMEC | breast: | n/a |
12 | chr14:19585143-19585193 | HPAEpiC | pulmonary alveolar: | n/a |
13 | chr14:20295005-20295055 | HUVEC | blood vessel: | n/a |
14 | chr14:19747134-19747184 | AG09319 | gingival: | n/a |
15 | chr14:20404281-20404331 | PFSK-1 | brain: | n/a |
16 | chr14:19643599-19643649 | A549 | lung: | n/a |
17 | chr14:19643599-19643649 | Caco-2 | colon: | n/a |
18 | chr14:20344394-20344444 | HRE | kidney: | n/a |
19 | chr14:19602855-19602905 | HCM | heart: | n/a |
20 | chr14:20135228-20135278 | NHBE | bronchial: | n/a |
21 | chr14:19626001-19626051 | Hepatocyte | liver: | n/a |
22 | chr14:20137365-20137415 | Jurkat | blood: | n/a |
23 | chr14:20137365-20137415 | HAEpiC | amniotic membrane: | n/a |
24 | chr14:20146694-20146744 | HRCEpiC | kidney: | n/a |
25 | chr14:20136693-20136743 | GM12892 | blood: | n/a |
26 | chr14:20139478-20139528 | HCT-116 | colon: | n/a |
27 | chr14:20403845-20403895 | AG04450 | lung: | fetal |
28 | chr14:20247697-20247747 | GM12891 | blood: | n/a |
29 | chr14:19625820-19625870 | IMR90 | lung: | fetal |
30 | chr14:20020668-20020718 | HRPEpiC | eye: | n/a |
31 | chr14:19625154-19625204 | Caco-2 | colon: | n/a |
32 | chr14:20134518-20134568 | HRPEpiC | eye: | n/a |
33 | chr14:19614541-19614591 | HMEC | breast: | n/a |
34 | chr14:20147652-20147702 | NHDF-neo | bronchial: | n/a |
35 | chr14:20134518-20134568 | SK-N-SH_RA | brain: | n/a |
36 | chr14:19614556-19614606 | SKMC | muscle: | n/a |
37 | chr14:20020024-20020074 | PANC-1 | pancreas: | n/a |
38 | chr14:20344394-20344444 | SK-N-SH_RA | brain: | n/a |
39 | chr14:19888434-19888484 | AG04449 | skin: | fetal |
40 | chr14:20146694-20146744 | HCF | heart: | n/a |
41 | chr14:20147187-20147237 | GM12892 | blood: | n/a |
42 | chr14:19647166-19647216 | CMK | blood: | n/a |
43 | chr14:20295616-20295666 | NB4 | blood: | n/a |
44 | chr14:20403845-20403895 | K562 | blood: | n/a |
45 | chr14:20247697-20247747 | NB4 | blood: | n/a |
46 | chr14:19887082-19887132 | HL-60 | blood: | n/a |
47 | chr14:20134518-20134568 | SAEC | small airway: | n/a |
48 | chr14:20134518-20134568 | AG09309 | skin: | n/a |
49 | chr14:20020657-20020707 | PFSK-1 | brain: | n/a |
50 | chr14:19719837-19719887 | ovcar-3 | ovarian: | n/a |
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr14:20382435..20385861-chr14:20389212..20390807,3 | K562 | blood: | |
2 | chr14:20382435..20385861-chr14:20389212..20390807,3 | K562 | blood: | |
3 | chr14:20330082..20332945-chr14:20336237..20338891,2 | K562 | blood: | |
4 | chr14:20378405..20379102-chr22:33621834..33622612,2 | MCF-7 | breast: |
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-POTEM-2 | chr14:19872436-19872499 | NONHSAT035499 |
2 | lnc-POTEG-4 | chr14:19653625-19653772 | ENSG00000225210 |
3 | lnc-OR4N2-3 | chr14:20006913-20007358 | NR_110505 |
4 | lnc-POTEG-4 | chr14:19718326-19718379 | NONHSAT035478 |
5 | lnc-POTEG-3 | chr14:19630574-19630835 | NONHSAT035465 |
6 | lnc-POTEM-2 | chr14:19921591-19921738 | NONHSAT035503 |
7 | lnc-POTEG-4 | chr14:19653893-19654004 | ENSG00000225210 |
8 | lnc-POTEM-1 | chr14:19968877-19969021 | ENSG00000257931 |
9 | lnc-POTEM-1 | chr14:19955880-19955945 | ENSG00000257931 |
10 | lnc-OR4N2-1 | chr14:20149579-20149748 | ENSG00000257395 |
11 | lnc-POTEG-4 | chr14:19652244-19652354 | NR_110526 |
12 | lnc-POTEM-2 | chr14:19884775-19884897 | ENSG00000244306 |
13 | lnc-OR4N2-3 | chr14:20008836-20010956 | NR_110505 |
14 | lnc-POTEG-4 | chr14:19655758-19655871 | ENSG00000225210 |
15 | lnc-OR4N2-4 | chr14:19904259-19904890 | ENSG00000215394 |
16 | lnc-POTEG-4 | chr14:19656089-19656210 | ENSG00000225210 |
17 | lnc-POTEM-4 | chr14:20146951-20147175 | ENSG00000259069.1 |
18 | lnc-POTEM-2 | chr14:19925240-19925348 | ENSG00000244306 |
19 | lnc-POTEG-4 | chr14:19653625-19653772 | NR_110526 |
20 | lnc-POTEM-7 | chr14:19680694-19681014 | ENSG00000228294 |
21 | lnc-POTEG-4 | chr14:19683692-19684834 | ENSG00000225210 |
22 | lnc-POTEM-6 | chr14:19837830-19837836 | ENSG00000257898.1 |
23 | lnc-POTEG-4 | chr14:19691355-19691922 | ENSG00000225210 |
24 | lnc-POTEM-2 | chr14:19921591-19921705 | NONHSAT035520 |
25 | lnc-POTEG-3 | chr14:19606385-19606529 | ENSG00000258314 |
26 | lnc-POTEM-2 | chr14:19912015-19913438 | ENSG00000244306 |
27 | lnc-POTEG-4 | chr14:19680591-19680685 | ENSG00000225210 |
28 | lnc-POTEG-4 | chr14:19680595-19680685 | ENSG00000225210 |
29 | lnc-POTEG-4 | chr14:19655782-19655871 | ENSG00000225210 |
30 | lnc-OR4N2-3 | chr14:20008836-20010958 | ENSG00000258276 |
31 | lnc-POTEM-3 | chr14:19940995-19941024 | ENSG00000249549 |
32 | lnc-POTEG-4 | chr14:19683336-19683870 | ENSG00000225210 |
33 | lnc-OR4N2-4 | chr14:19904259-19904571 | XLOC_010749 |
34 | lnc-POTEG-4 | chr14:19691355-19692916 | NR_110526 |
35 | lnc-POTEM-2 | chr14:19925240-19925333 | NONHSAT140152 |
36 | lnc-POTEG-4 | chr14:19656089-19656224 | ENSG00000225210 |
37 | lnc-POTEM-7 | chr14:19678513-19678600 | XLOC_010962 |
38 | lnc-POTEM-2 | chr14:19921359-19921470 | ENSG00000244306 |
39 | lnc-POTEG-3 | chr14:19611768-19611964 | ENSG00000258314.2 |
40 | lnc-POTEG-5 | chr14:19859457-19859970 | ENSG00000258188.1 |
41 | lnc-POTEM-2 | chr14:19894710-19894790 | ENSG00000244306 |
42 | lnc-POTEM-2 | chr14:19893856-19894790 | ENSG00000244306 |
43 | lnc-POTEM-1 | chr14:19935898-19936380 | ENSG00000257931 |
44 | lnc-OR4N2-4 | chr14:19904259-19904572 | ENSG00000215394 |
45 | lnc-POTEG-7 | chr14:19597285-19597388 | NONHSAT035463 |
46 | lnc-POTEM-5 | chr14:19740033-19742744 | ENSG00000257310 |
47 | lnc-POTEM-2 | chr14:19919138-19919273 | ENSG00000244306 |
48 | lnc-POTEG-3 | chr14:19639008-19639483 | NONHSAT035465 |
49 | lnc-POTEM-2 | chr14:19921591-19921705 | NONHSAT035521 |
50 | lnc-POTEG-4 | chr14:19680595-19680685 | NONHSAT035478 |
No data |
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No. | miRNA target gene | miRNA name | Chromosome Location | mirBase accession |
---|---|---|---|---|
1 | POTEG | hsa-miR-26b-5p | chr14:19563442-19563464 |
Variant related genes | Relation type |
---|---|
ENSG00000259016 | TF binding region |
OR4K5 | TF binding region |
GRAMD4P3 | TF binding region |
ENSG00000244306 | TF binding region |
ENSG00000257142 | TF binding region |
ENSG00000259069 | TF binding region |
OR4K4P | TF binding region |
ENSG00000257884 | TF binding region |
ENSG00000258324 | TF binding region |
OR4K3 | TF binding region |
ARHGAP42P4 | TF binding region |
ENSG00000238492 | TF binding region |
ENSG00000257573 | TF binding region |
ENSG00000257846 | TF binding region |
BMS1P18 | TF binding region |
OR11H2 | TF binding region |
ENSG00000257357 | TF binding region |
ENSG00000257868 | TF binding region |
OR4N2 | TF binding region |
ENSG00000258314 | TF binding region |
OR11H13P | TF binding region |
ENSG00000258027 | TF binding region |
OR4K1 | TF binding region |
ENSG00000258198 | TF binding region |
MED15P6 | TF binding region |
RNU6-1239P | TF binding region |
OR4M1 | TF binding region |
BMS1P17 | TF binding region |
ENSG00000258781 | TF binding region |
ENSG00000258252 | TF binding region |
OR11K2P | TF binding region |
ENSG00000257395 | TF binding region |
OR4N1P | TF binding region |
ENSG00000257493 | TF binding region |
OR4Q3 | TF binding region |
ENSG00000258276 | TF binding region |
ENSG00000271632 | TF binding region |
OR4H12P | TF binding region |
ENSG00000257931 | TF binding region |
OR4K6P | TF binding region |
ENSG00000225210 | TF binding region |
ENSG00000257310 | TF binding region |
GRAMD4P4 | TF binding region |
ENSG00000257751 | TF binding region |
RNU6-1268P | TF binding region |
ENSG00000257749 | TF binding region |
ENSG00000258188 | TF binding region |
ENSG00000257977 | TF binding region |
ENSG00000257432 | TF binding region |
POTEM | TF binding region |
OR4K2 | TF binding region |
DUXAP10 | TF binding region |
ENSG00000259016 | CpG island |
OR4K5 | CpG island |
GRAMD4P3 | CpG island |
ENSG00000244306 | CpG island |
ENSG00000257142 | CpG island |
ENSG00000259069 | CpG island |
OR4K4P | CpG island |
ENSG00000257884 | CpG island |
ENSG00000258324 | CpG island |
OR4K3 | CpG island |
ARHGAP42P4 | CpG island |
ENSG00000238492 | CpG island |
ENSG00000257573 | CpG island |
ENSG00000257846 | CpG island |
BMS1P18 | CpG island |
OR11H2 | CpG island |
ENSG00000257357 | CpG island |
ENSG00000257868 | CpG island |
OR4N2 | CpG island |
ENSG00000258314 | CpG island |
OR11H13P | CpG island |
ENSG00000258027 | CpG island |
OR4K1 | CpG island |
ENSG00000258198 | CpG island |
MED15P6 | CpG island |
RNU6-1239P | CpG island |
OR4M1 | CpG island |
BMS1P17 | CpG island |
ENSG00000258781 | CpG island |
ENSG00000258252 | CpG island |
OR11K2P | CpG island |
ENSG00000257395 | CpG island |
OR4N1P | CpG island |
ENSG00000257493 | CpG island |
OR4Q3 | CpG island |
ENSG00000258276 | CpG island |
ENSG00000271632 | CpG island |
OR4H12P | CpG island |
ENSG00000257931 | CpG island |
OR4K6P | CpG island |
ENSG00000225210 | CpG island |
ENSG00000257310 | CpG island |
GRAMD4P4 | CpG island |
ENSG00000257751 | CpG island |
RNU6-1268P | CpG island |
ENSG00000257749 | CpG island |
ENSG00000258188 | CpG island |
ENSG00000257977 | CpG island |
ENSG00000257432 | CpG island |
POTEM | CpG island |
OR4K2 | CpG island |
DUXAP10 | CpG island |
ENSG00000176290 | chromatin interactions |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs28451379 | chr14:19562781-19562782 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
2 | rs201216922 | chr14:19562828-19562829 | Inactive region | CpG islandlncRNA | 1 gene(s) | Overlapped CNVs | n/a |
3 | rs530330458 | chr14:19562832-19562833 | Inactive region | CpG islandlncRNA | 1 gene(s) | Overlapped CNVs | n/a |
4 | rs575030842 | chr14:19562840-19562841 | Inactive region | CpG islandlncRNA | 1 gene(s) | Overlapped CNVs | n/a |
5 | rs542541558 | chr14:19562845-19562846 | Inactive region | TF binding regionCpG islandlncRNA | 1 gene(s) | Overlapped CNVs | n/a |
6 | rs2818584 | chr14:19562864-19562865 | Inactive region | TF binding regionCpG islandlncRNA | 1 gene(s) | Overlapped CNVs | n/a |
7 | rs200563784 | chr14:19562876-19562877 | Inactive region | TF binding regionCpG islandlncRNA | 1 gene(s) | Overlapped CNVs | n/a |
8 | rs201929364 | chr14:19562877-19562878 | Inactive region | TF binding regionCpG islandlncRNA | 1 gene(s) | Overlapped CNVs | n/a |
9 | rs376077764 | chr14:19562895-19562896 | Inactive region | TF binding regionlncRNA | 1 gene(s) | Overlapped CNVs | n/a |
10 | rs566540842 | chr14:19562925-19562926 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
11 | rs28510457 | chr14:19562978-19562979 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
12 | rs533963949 | chr14:19562995-19562996 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
13 | rs28378509 | chr14:19563017-19563018 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
14 | rs139833488 | chr14:19563018-19563019 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
15 | rs28415648 | chr14:19563026-19563027 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
16 | rs552229019 | chr14:19563033-19563034 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
17 | rs570653742 | chr14:19563090-19563091 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
18 | rs61971039 | chr14:19563164-19563165 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
19 | rs373937897 | chr14:19563190-19563191 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
20 | rs537610790 | chr14:19563191-19563192 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
21 | rs556090675 | chr14:19563193-19563194 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
22 | rs574649851 | chr14:19563209-19563210 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
23 | rs535400901 | chr14:19563210-19563211 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
24 | rs554070040 | chr14:19563219-19563220 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
25 | rs200492092 | chr14:19563223-19563224 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
26 | rs572050981 | chr14:19563232-19563233 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
27 | rs144811335 | chr14:19563236-19563237 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
28 | rs186466588 | chr14:19563239-19563240 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
29 | rs368061099 | chr14:19563253-19563254 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
30 | rs61971040 | chr14:19563255-19563256 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
31 | rs576213368 | chr14:19563300-19563301 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
32 | rs544744444 | chr14:19563323-19563324 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
33 | rs562962331 | chr14:19563334-19563335 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
34 | rs530382228 | chr14:19563356-19563357 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
35 | rs61971041 | chr14:19563366-19563367 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
36 | rs560439364 | chr14:19563386-19563387 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
37 | rs61971042 | chr14:19563402-19563403 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
38 | rs201874138 | chr14:19563417-19563418 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
39 | rs200183084 | chr14:19563432-19563433 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
40 | rs200807306 | chr14:19563437-19563438 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
41 | rs527673095 | chr14:19563438-19563439 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
42 | rs552165506 | chr14:19563447-19563448 | Inactive region | lncRNAmiRNA target site | 1 gene(s) | Overlapped CNVs | n/a |
43 | rs570567492 | chr14:19563450-19563451 | Inactive region | lncRNAmiRNA target site | 1 gene(s) | Overlapped CNVs | n/a |
44 | rs372243218 | chr14:19563470-19563471 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
45 | rs148687889 | chr14:19563476-19563477 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
46 | rs202200474 | chr14:19563494-19563495 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
47 | rs200475462 | chr14:19563496-19563497 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
48 | rs374279129 | chr14:19563505-19563506 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
49 | rs199732644 | chr14:19563532-19563533 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
50 | rs549916239 | chr14:19563547-19563548 | Inactive region | TF binding regionlncRNA | 1 gene(s) | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Cancer | 20164920 | CNVD |
Esophageal cancer | 21851588 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Retinoblastoma | 21504564 | CNVD |
High-proliferative meningiomas | 17937814 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Autism | 22495311 | CNVD |
Cone-rod dystrophy | 18421352 | CNVD |
T-cell acute lymphoblastic leukemia | 20065082 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Renal cell carcinoma | 19461508 | CNVD |
Cancer | 21637783 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Melanoma | 18172304 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Oral cancer | 21386901 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Breast cancer | 17899364 | CNVD |
Colorectal cancer | 16774939 | CNVD |
Neuroblastoma | 19435921 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Gastrointestinal stromal cancer | 19259404 | CNVD |
Gastrointestinal stromal cancer | 17535989 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Paraganglioma | 17535989 | CNVD |
Pulmonary chondroma | 17535989 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Breast cancer | 17142309 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Alzheimer''s disease | 21482944 | CNVD |
Mental retardation | 19951919 | CNVD |
Neuroblastoma | 21899760 | CNVD |
Cutaneous T-cell lymphoma | 21881587 | CNVD |
Heart disease | 21282601 | CNVD |
Esophageal cancer | 20955586 | CNVD |
Neurodevelopmental disorder | 22521361 | CNVD |
Lung cancer | 16773561 | CNVD |
Multiple myeloma | 16616336 | CNVD |
Cancer | 17440070 | CNVD |
Breast cancer | 16272173 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Epilepsy | 20736978 | CNVD |
Mental retardation | 20736978 | CNVD |
severe speech impairment | 20736978 | CNVD |
speech impairment | 20736978 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Developmental delay | 21147756 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Lung cancer | 18438408 | CNVD |
Gastrointestinal stromal cancer | 20818650 | CNVD |
Renal cell carcinoma | 21668985 | CNVD |
Breast cancer | 21364760 | CNVD |
Prostate cancer | 18632612 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Breast cancer | 22522925 | CNVD |
Ependymoma | 20639864 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
Non-syndromic sensorineural hearing loss | 19587683 | CNVD |
Glioma | 20126413 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Pancreatic ductal adenocarcinoma | 19077451 | CNVD |
Schizophrenia | 23813976 | CNVD |
Chronic myeloid leukemia | 20724749 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Lung cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Breast cancer | 21509527 | CNVD |
Amyotrophic lateral sclerosis | 20685689 | CNVD |
Autism | 20531469 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Ovarian cancer | 21720365 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:19597000-19597600 | ZNF genes & repeats | iPS DF 6.9 Cell Line | embryonic stem cell |
2 | chr14:19597200-19597600 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
3 | chr14:19607400-19609600 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
4 | chr14:19608600-19609200 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
5 | chr14:19610800-19612800 | Weak transcription | Fetal Lung | lung |
6 | chr14:19611000-19611200 | Enhancers | Lung | lung |
7 | chr14:19611200-19612800 | Weak transcription | Lung | lung |
8 | chr14:19612600-19615200 | Weak transcription | Right Atrium | heart |
9 | chr14:19612800-19613400 | ZNF genes & repeats | Fetal Kidney | kidney |
10 | chr14:19612800-19613400 | ZNF genes & repeats | Fetal Lung | lung |
11 | chr14:19612800-19613400 | ZNF genes & repeats | Lung | lung |
12 | chr14:19613000-19613200 | ZNF genes & repeats | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
13 | chr14:19613000-19613200 | ZNF genes & repeats | Gastric | stomach |
14 | chr14:19613000-19613200 | Bivalent Enhancer | K562 | blood |
15 | chr14:19613000-19613400 | ZNF genes & repeats | H1 Derived Mesenchymal Stem Cells | ES cell derived |
16 | chr14:19613000-19613400 | ZNF genes & repeats | H9 Cell Line | embryonic stem cell |
17 | chr14:19613000-19613400 | ZNF genes & repeats | iPS DF 6.9 Cell Line | embryonic stem cell |
18 | chr14:19613000-19613400 | ZNF genes & repeats | Fetal Brain Male | brain |
19 | chr14:19613000-19613400 | ZNF genes & repeats | Pancreas | Pancrea |
20 | chr14:19613000-19615000 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
21 | chr14:19613400-19614200 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
22 | chr14:19613400-19614400 | Weak transcription | Pancreas | Pancrea |
23 | chr14:19613400-19614600 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
24 | chr14:19613400-19616200 | Weak transcription | Fetal Lung | lung |
25 | chr14:19613600-19614200 | Weak transcription | Lung | lung |
26 | chr14:19614200-19614800 | ZNF genes & repeats | iPS DF 6.9 Cell Line | embryonic stem cell |
27 | chr14:19614200-19614800 | Active TSS | K562 | blood |
28 | chr14:19614400-19614800 | ZNF genes & repeats | Foreskin Fibroblast Primary Cells skin01 | Skin |
29 | chr14:19614400-19614800 | ZNF genes & repeats | Foreskin Fibroblast Primary Cells skin02 | Skin |
30 | chr14:19614400-19614800 | Bivalent Enhancer | Lung | lung |
31 | chr14:19614400-19614800 | ZNF genes & repeats | Pancreas | Pancrea |
32 | chr14:19614400-19615000 | Bivalent/Poised TSS | A549 | lung |
33 | chr14:19614600-19614800 | ZNF genes & repeats | H1 Derived Mesenchymal Stem Cells | ES cell derived |
34 | chr14:19614600-19614800 | Bivalent/Poised TSS | Colon Smooth Muscle | Colon |
35 | chr14:19614600-19614800 | Bivalent Enhancer | Right Ventricle | heart |
36 | chr14:19614800-19616000 | Weak transcription | Pancreas | Pancrea |
37 | chr14:19619800-19620000 | Bivalent Enhancer | A549 | lung |
38 | chr14:19641200-19641400 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
39 | chr14:19641200-19641400 | Enhancers | K562 | blood |
40 | chr14:19641200-19641600 | Active TSS | A549 | lung |
41 | chr14:19641200-19641600 | Active TSS | HepG2 | liver |
42 | chr14:19641600-19642800 | Weak transcription | HepG2 | liver |
43 | chr14:19641600-19643000 | Weak transcription | A549 | lung |
44 | chr14:19642800-19643200 | Enhancers | HepG2 | liver |
45 | chr14:19643000-19643200 | Enhancers | K562 | blood |
46 | chr14:19643000-19643400 | Enhancers | A549 | lung |
47 | chr14:19649600-19650000 | Active TSS | A549 | lung |
48 | chr14:19686600-19686800 | Enhancers | Placenta | Placenta |
49 | chr14:19761400-19761600 | Enhancers | Dnd41 | blood |
50 | chr14:19763800-19764600 | Weak transcription | Dnd41 | blood |