Variant report

Variant	rs542541558
Chromosome Location	chr14:19562845-19562846
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr14:19562844-19562904	Lung_OC	lung:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr14:19562827-19562877	T-47D	breast:	n/a
2	chr14:19562827-19562877	AG04450	lung:	fetal
3	chr14:19562827-19562877	ProgFib	skin:	n/a
4	chr14:19562827-19562877	H1-hESC	embryonic stem cell:	embryo
5	chr14:19562827-19562877	Caco-2	colon:	n/a
6	chr14:19562827-19562877	SK-N-SH_RA	brain:	n/a
7	chr14:19562827-19562877	CMK	blood:	n/a
8	chr14:19562827-19562877	Hela-S3	cervix:	n/a
9	chr14:19562827-19562877	AG09319	gingival:	n/a
10	chr14:19562827-19562877	AoSMC	blood vessel:	n/a
11	chr14:19562827-19562877	GM19239	blood:	n/a
12	chr14:19562827-19562877	BE2_C	brain:	n/a
13	chr14:19562827-19562877	HCM	heart:	n/a
14	chr14:19562827-19562877	HEEpiC	esophagus:	n/a
15	chr14:19562827-19562877	HCT-116	colon:	n/a
16	chr14:19562827-19562877	GM12891	blood:	n/a
17	chr14:19562827-19562877	HNPCEpiC	eye:	n/a
18	chr14:19562827-19562877	A549	lung:	n/a
19	chr14:19562827-19562877	BJ	skin:	n/a
20	chr14:19562827-19562877	HPAEpiC	pulmonary alveolar:	n/a
21	chr14:19562827-19562877	GM06990	blood:	n/a
22	chr14:19562827-19562877	SK-N-SH	brain:	n/a
23	chr14:19562827-19562877	AG10803	skin:	n/a
24	chr14:19562827-19562877	HCPEpiC	choroid plexus:	n/a
25	chr14:19562827-19562877	SAEC	small airway:	n/a
26	chr14:19562827-19562877	HL-60	blood:	n/a
27	chr14:19562827-19562877	HRE	kidney:	n/a
28	chr14:19562827-19562877	AG04449	skin:	fetal
29	chr14:19562827-19562877	U87	brain:	n/a
30	chr14:19562827-19562877	NHDF-neo	bronchial:	n/a
31	chr14:19562827-19562877	PANC-1	pancreas:	n/a
32	chr14:19562827-19562877	Jurkat	blood:	n/a
33	chr14:19562827-19562877	GM12878	blood:	n/a
34	chr14:19562827-19562877	PrEC	prostate:	n/a
35	chr14:19562827-19562877	SK-N-MC	brain:	n/a
36	chr14:19562827-19562877	GM12892	blood:	n/a
37	chr14:19562827-19562877	PFSK-1	brain:	n/a
38	chr14:19562827-19562877	NHBE	bronchial:	n/a
39	chr14:19562827-19562877	HepG2	liver:	n/a
40	chr14:19562827-19562877	Hepatocyte	liver:	n/a
41	chr14:19562827-19562877	MCF10A-Er-Src	breast:	n/a
42	chr14:19562827-19562877	LNCaP	prostate:	n/a
43	chr14:19562827-19562877	ovcar-3	ovarian:	n/a
44	chr14:19562827-19562877	NB4	blood:	n/a
45	chr14:19562827-19562877	HMEC	breast:	n/a
46	chr14:19562827-19562877	ECC-1	luminal epithelium:	n/a
47	chr14:19562827-19562877	SKMC	muscle:	n/a
48	chr14:19562827-19562877	HIPEpiC	eye:	n/a
49	chr14:19562827-19562877	HUVEC	blood vessel:	n/a
50	chr14:19562827-19562877	HRPEpiC	eye:	n/a

No data

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-POTEM-8	chr14:19562689-19564808	ENSG00000258252

No data

Variant related genes	Relation type
RNU6-1239P	TF binding region
RNU6-1239P	CpG island

Extended variants
information (count: 221 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:221 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048651	chr14:19002112-19602662	ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1055077	chr14:19002112-19606995	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv1054177	chr14:19002112-19620039	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1040404	chr14:19002112-19689305	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv1049474	chr14:19002112-19697873	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv1036376	chr14:19002112-19706746	Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv1050303	chr14:19002112-19790343	Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
8	nsv1047368	chr14:19002112-19796172	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
9	nsv1035372	chr14:19002112-19801743	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv1052480	chr14:19002112-19877060	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
11	nsv1039262	chr14:19002112-19938429	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
12	nsv1042816	chr14:19015748-19689305	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
13	nsv1045932	chr14:19117985-19877060	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
14	nsv1036252	chr14:19273613-19801743	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
15	nsv1051852	chr14:19273613-19802529	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
16	nsv1037633	chr14:19273613-19852821	Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
17	nsv1048600	chr14:19273613-19877060	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
18	nsv1053054	chr14:19273613-19938429	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
19	nsv1050069	chr14:19273613-20010901	Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
20	nsv1036591	chr14:19273613-20105479	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
21	nsv1045892	chr14:19273613-20221839	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
22	nsv1041547	chr14:19273613-20241852	ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
23	nsv563597	chr14:19280733-20075427	ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
24	nsv530768	chr14:19323022-20180453	Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
25	nsv1038926	chr14:19335739-19801743	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
26	nsv1043334	chr14:19335739-19844095	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
27	nsv1053750	chr14:19335739-19852821	Bivalent/Poised TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
28	nsv1036949	chr14:19335739-19877060	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
29	nsv1044317	chr14:19335739-19938429	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
30	nsv1050849	chr14:19335739-20010901	Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
31	nsv1050003	chr14:19335739-20217561	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
32	nsv1054019	chr14:19335739-20232626	Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
33	nsv1053511	chr14:19335739-20259951	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
34	nsv563609	chr14:19344858-19612853	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
35	nsv563610	chr14:19344858-19649523	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
36	nsv563611	chr14:19351475-19602149	ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
37	nsv563612	chr14:19351475-19649523	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
38	esv14995	chr14:19361827-19757851	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS	TF binding region CpG island lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
39	esv3497943	chr14:19364617-19755312	ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS	TF binding region CpG island lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
40	esv3497944	chr14:19364617-19755312	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS	TF binding region CpG island lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
41	nsv563613	chr14:19376736-20317747	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
42	nsv1049354	chr14:19382197-19844095	Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
43	nsv1047182	chr14:19382197-19852821	Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
44	nsv1040845	chr14:19382197-19877060	ZNF genes & repeats Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
45	nsv1038353	chr14:19382197-19938429	ZNF genes & repeats Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
46	nsv1052207	chr14:19382197-20010901	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
47	nsv1040110	chr14:19382197-20105479	Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
48	nsv1043078	chr14:19382197-20203886	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
49	nsv1045112	chr14:19382197-20211644	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
50	nsv1041816	chr14:19382197-20253780	ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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