Variant report

Variant	nsv1050137
Chromosome Location	chr13:40090742-40118499
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PROSER1-3	chr13:40100016-40107556	NONHSAT033305

Extended variants
information (count: 1053 )
Associated
traits (count: 120 )

Variant overlapped rSNPs/rCNVs (count:1053 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1927208	chr13:40090742-40090743	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs187345763	chr13:40090747-40090748	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs192298423	chr13:40090760-40090761	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs143990699	chr13:40090776-40090777	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs200550852	chr13:40090790-40090791	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs150893103	chr13:40090804-40090805	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs57207095	chr13:40090806-40090807	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs536118025	chr13:40090817-40090818	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs150692341	chr13:40090907-40090908	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs74944902	chr13:40090911-40090912	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs35183162	chr13:40090912-40090913	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs536234752	chr13:40090921-40090922	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
13	rs374323184	chr13:40090965-40090966	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
14	rs139404150	chr13:40090994-40090995	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs1570415	chr13:40090997-40090998	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs549709177	chr13:40091029-40091030	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs535929968	chr13:40091046-40091047	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs150073302	chr13:40091084-40091085	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs114071930	chr13:40091094-40091095	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs545748595	chr13:40091113-40091114	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs145323855	chr13:40091114-40091115	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs4597186	chr13:40091131-40091132	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs9576829	chr13:40091136-40091137	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs9576830	chr13:40091175-40091176	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs561085642	chr13:40091179-40091180	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs61945467	chr13:40091181-40091182	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs142554006	chr13:40091235-40091236	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs184516115	chr13:40091240-40091241	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs559138454	chr13:40091291-40091292	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs576908563	chr13:40091295-40091296	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs551293149	chr13:40091296-40091297	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs571206576	chr13:40091305-40091306	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs536691064	chr13:40091358-40091359	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs550562510	chr13:40091370-40091371	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs567120220	chr13:40091445-40091446	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs1005962	chr13:40091467-40091468	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs371392034	chr13:40091472-40091473	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs539997978	chr13:40091475-40091476	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs553087299	chr13:40091484-40091485	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs61698199	chr13:40091529-40091530	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs569303333	chr13:40091541-40091542	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs9548789	chr13:40091615-40091616	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs544985924	chr13:40091626-40091627	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs9532386	chr13:40091633-40091634	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs559332636	chr13:40091659-40091660	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs555243485	chr13:40091716-40091717	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs144694108	chr13:40091720-40091721	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs147904981	chr13:40091721-40091722	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs4943673	chr13:40091737-40091738	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
50	rs189082587	chr13:40091775-40091776	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:120)

Disease	PMID	Source
Cancer	20164920	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Squamous cell cancer	20885788	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Thyroid cancer	19087340	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	17899364	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Colorectal cancer	16774939	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Trisomy	24170809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Alveolar rhabdomyosarcoma	16790082	CNVD
Breast cancer	21785460	CNVD
Prostate cancer	18632612	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Paraganglioma	21461997	CNVD
Pheochromocytoma	21461997	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Monoclonal gammopathy of undetermined significance	19135901	CNVD
Prostate cancer	19242612	CNVD
Prostate cancer	17245344	CNVD
Colorectal cancer	21586687	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Retinoblastoma	19183342	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Developmental delay	21147756	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Melanoma	18172304	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	17217626	CNVD
Retinoblastoma	21504564	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Chronic lymphocytic leukemia	17805327	CNVD
Mental retardation	17502991	CNVD
Retinoblastoma	17502991	CNVD
Bipolar disorder	18458673	CNVD
Liposarcoma	21253554	CNVD
T-cell lymphomas	19863542	CNVD
Cervical cancer	21062161	CNVD
microdeletion syndrome	19284877	CNVD
Ovarian cancer	22355333	CNVD
Colorectal cancer	21645411	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Glioma	17146433	CNVD
Malignant glioma	17146433	CNVD
Sudden cardiac death	19188705	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	17053054	CNVD
Multiple myeloma	19135901	CNVD
Autism	18414403	CNVD
Neurocytoma	17123091	CNVD
Central neurocytomas	17123091	CNVD
Prostate cancer	16461572	CNVD
Merkel cell carcinoma	19020549	CNVD

Chromatin state (count:542 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:40074200-40094400	Weak transcription	Adipose Nuclei	Adipose
2	chr13:40076400-40096000	Weak transcription	Lung	lung
3	chr13:40077600-40101400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:40081600-40096000	Weak transcription	Fetal Lung	lung
5	chr13:40081600-40096600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr13:40088000-40090800	Enhancers	Left Ventricle	heart
7	chr13:40088000-40090800	Enhancers	Right Ventricle	heart
8	chr13:40088200-40091600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr13:40088400-40091000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr13:40088400-40091000	Enhancers	Fetal Muscle Leg	muscle
11	chr13:40088400-40091000	Enhancers	Right Atrium	heart
12	chr13:40088400-40091600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr13:40088600-40090800	Enhancers	H1 Cell Line	embryonic stem cell
14	chr13:40088600-40090800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr13:40088600-40090800	Enhancers	Aorta	Aorta
16	chr13:40088600-40090800	Enhancers	HSMMtube	muscle
17	chr13:40088600-40091000	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr13:40088800-40090800	Enhancers	Fetal Brain Female	brain
19	chr13:40089200-40090800	Enhancers	Brain Substantia Nigra	brain
20	chr13:40089400-40091200	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr13:40089600-40091000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr13:40089600-40091000	Enhancers	Colon Smooth Muscle	Colon
23	chr13:40089600-40091000	Enhancers	Fetal Brain Male	brain
24	chr13:40089600-40091200	Enhancers	Brain Hippocampus Middle	brain
25	chr13:40089800-40090800	Enhancers	Osteobl	bone
26	chr13:40089800-40091200	Enhancers	Muscle Satellite Cultured Cells	--
27	chr13:40090000-40091000	Enhancers	HMEC	breast
28	chr13:40090000-40091200	Flanking Active TSS	Fetal Heart	heart
29	chr13:40090000-40091200	Enhancers	NHDF-Ad	bronchial
30	chr13:40090200-40090800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr13:40090200-40090800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr13:40090200-40090800	Enhancers	Ovary	ovary
33	chr13:40090200-40090800	Enhancers	NHEK	skin
34	chr13:40090200-40091000	Enhancers	Brain Anterior Caudate	brain
35	chr13:40090200-40091000	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr13:40090200-40091000	Enhancers	HSMM	muscle
37	chr13:40090200-40091200	Enhancers	Brain Cingulate Gyrus	brain
38	chr13:40090400-40090800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr13:40090400-40090800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr13:40090400-40090800	Active TSS	Brain Germinal Matrix	brain
41	chr13:40090400-40091000	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr13:40090400-40091000	Enhancers	Psoas Muscle	Psoas
43	chr13:40090600-40091000	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr13:40090600-40092200	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr13:40090600-40094600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr13:40090600-40100800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr13:40090600-40102400	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr13:40090800-40091600	Enhancers	Brain Germinal Matrix	brain
49	chr13:40090800-40094000	Weak transcription	Left Ventricle	heart
50	chr13:40090800-40094200	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links