Variant report

Variant	nsv1052213
Chromosome Location	chr10:97536795-97561941
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97529390..97531168-chr10:97540641..97542614,2	MCF-7	breast:
2	chr10:97453795..97454542-chr10:97539194..97539757,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCTN3-1	chr10:97544783-97545002	NONHSAT015766
2	lnc-TCTN3-1	chr10:97544783-97545002	ENSG00000226688.1

Variant related genes	Relation type
ENSG00000119977	chromatin interactions

Extended variants
information (count: 766 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:766 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2105359	chr10:97536795-97536796	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs529884253	chr10:97536827-97536828	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs185937449	chr10:97536883-97536884	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs553478100	chr10:97536894-97536895	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs111559150	chr10:97536895-97536896	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs536139872	chr10:97536917-97536918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs556063434	chr10:97536934-97536935	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs576030042	chr10:97536935-97536936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs183945287	chr10:97536965-97536966	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs188695826	chr10:97537013-97537014	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs578029910	chr10:97537043-97537044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs369293142	chr10:97537058-97537059	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs539213558	chr10:97537190-97537191	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs560090703	chr10:97537204-97537205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs551952129	chr10:97537223-97537224	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs529281942	chr10:97537225-97537226	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs372828785	chr10:97537325-97537326	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs562413269	chr10:97537332-97537333	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs531636509	chr10:97537363-97537364	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs141050763	chr10:97537418-97537419	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs571459835	chr10:97537427-97537428	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs144771468	chr10:97537448-97537449	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs547551030	chr10:97537461-97537462	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs567385762	chr10:97537514-97537515	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs536227912	chr10:97537538-97537539	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs556200367	chr10:97537555-97537556	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs192788778	chr10:97537556-97537557	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs538572666	chr10:97537586-97537587	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs138778850	chr10:97537611-97537612	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs11593761	chr10:97537612-97537613	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
31	rs574883418	chr10:97537632-97537633	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs569297724	chr10:97537633-97537634	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs140377658	chr10:97537700-97537701	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs145270202	chr10:97537701-97537702	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs147503226	chr10:97537706-97537707	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs562550364	chr10:97537770-97537771	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs531497162	chr10:97537776-97537777	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs113133567	chr10:97537791-97537792	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs564916492	chr10:97537803-97537804	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs11188483	chr10:97537822-97537823	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs527447988	chr10:97537851-97537852	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs547634802	chr10:97537852-97537853	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs567324345	chr10:97537860-97537861	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs117242046	chr10:97537876-97537877	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs7915087	chr10:97537881-97537882	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs150125199	chr10:97537891-97537892	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs7914736	chr10:97537898-97537899	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs569682308	chr10:97537906-97537907	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs138450135	chr10:97537917-97537918	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs144023137	chr10:97537924-97537925	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Prostate cancer	16573809	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Lung cancer	16773561	CNVD
Colorectal cancer	16912164	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:329 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97521800-97537400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr10:97521800-97537400	Weak transcription	Lung	lung
3	chr10:97527800-97537400	Weak transcription	Aorta	Aorta
4	chr10:97529000-97544200	Weak transcription	Spleen	Spleen
5	chr10:97531400-97537600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:97531600-97541400	Weak transcription	Primary B cells from cord blood	blood
7	chr10:97532600-97537600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr10:97533000-97537400	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr10:97533400-97540400	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr10:97533600-97537600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr10:97536600-97543600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr10:97537400-97537600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr10:97537400-97537800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:97537400-97537800	ZNF genes & repeats	Aorta	Aorta
15	chr10:97537400-97538000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
16	chr10:97537400-97538000	ZNF genes & repeats	Lung	lung
17	chr10:97537600-97538200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:97537600-97538200	Enhancers	Primary B cells from peripheral blood	blood
19	chr10:97537600-97538400	ZNF genes & repeats	GM12878-XiMat	blood
20	chr10:97537600-97539000	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr10:97537600-97543000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr10:97537800-97541800	Weak transcription	Aorta	Aorta
23	chr10:97538000-97538600	Weak transcription	Lung	lung
24	chr10:97538000-97541400	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr10:97538200-97539000	Weak transcription	Primary B cells from peripheral blood	blood
26	chr10:97538400-97538600	Weak transcription	GM12878-XiMat	blood
27	chr10:97538600-97541600	Genic enhancers	GM12878-XiMat	blood
28	chr10:97539000-97539200	Genic enhancers	Monocytes-CD14+_RO01746	blood
29	chr10:97539000-97539800	Enhancers	Primary B cells from peripheral blood	blood
30	chr10:97539200-97541400	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr10:97539800-97540400	Weak transcription	Primary B cells from peripheral blood	blood
32	chr10:97540000-97540800	Enhancers	Colon Smooth Muscle	Colon
33	chr10:97540400-97540600	Genic enhancers	Primary B cells from peripheral blood	blood
34	chr10:97540400-97540800	Enhancers	Gastric	stomach
35	chr10:97540400-97541000	Enhancers	Rectal Smooth Muscle	rectum
36	chr10:97540400-97545800	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr10:97540600-97541400	Weak transcription	Primary B cells from peripheral blood	blood
38	chr10:97540800-97541800	Weak transcription	Colon Smooth Muscle	Colon
39	chr10:97541000-97541400	Weak transcription	Rectal Smooth Muscle	rectum
40	chr10:97541400-97542400	Enhancers	Monocytes-CD14+_RO01746	blood
41	chr10:97541400-97544200	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr10:97541400-97544400	Enhancers	Primary hematopoietic stem cells	blood
43	chr10:97541400-97544600	Enhancers	Rectal Smooth Muscle	rectum
44	chr10:97541400-97547800	Enhancers	Primary B cells from cord blood	blood
45	chr10:97541400-97548400	Enhancers	Primary B cells from peripheral blood	blood
46	chr10:97541600-97543600	Flanking Active TSS	GM12878-XiMat	blood
47	chr10:97541800-97542000	Enhancers	Aorta	Aorta
48	chr10:97541800-97545000	Enhancers	Colon Smooth Muscle	Colon
49	chr10:97542000-97542200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr10:97542000-97542600	Weak transcription	Aorta	Aorta

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