Variant report

Variant	rs2105359
Chromosome Location	chr10:97536795-97536796
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10786237	0.85[AFR][1000 genomes]
rs10882639	0.87[LWK][hapmap]
rs11188434	0.87[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11188513	0.88[YRI][hapmap]
rs12098522	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs17111156	0.81[MEX][hapmap]
rs1933168	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1935816	0.89[AFR][1000 genomes]
rs2153914	0.88[YRI][hapmap]
rs28445650	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3181129	0.92[YRI][hapmap];0.84[AFR][1000 genomes]
rs41291578	0.90[MEX][hapmap]
rs4406763	0.83[AFR][1000 genomes]
rs4614366	0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs4918979	0.82[CHB][hapmap]
rs55887726	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6584020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7073313	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7096248	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895441	0.84[JPT][hapmap]
rs7899286	0.84[JPT][hapmap]
rs7906450	0.84[JPT][hapmap]
rs7908923	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.84[MEX][hapmap];0.85[MKK][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7923971	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv895907	chr10:97529318-97686064	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1052213	chr10:97536795-97561941	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2105359	ENTPD1	cis	lymphoblastoid	seeQTL
rs2105359	ALDH18A1	cis	lymphoblastoid	seeQTL
rs2105359	ENTPD1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97521800-97537400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr10:97521800-97537400	Weak transcription	Lung	lung
3	chr10:97527800-97537400	Weak transcription	Aorta	Aorta
4	chr10:97529000-97544200	Weak transcription	Spleen	Spleen
5	chr10:97531400-97537600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:97531600-97541400	Weak transcription	Primary B cells from cord blood	blood
7	chr10:97532600-97537600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr10:97533000-97537400	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr10:97533400-97540400	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr10:97533600-97537600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr10:97536600-97543600	Weak transcription	Stomach Smooth Muscle	stomach

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