Variant report

Variant	rs10786237
Chromosome Location	chr10:97564054-97564055
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10736092	0.80[ASN][1000 genomes]
rs10736093	0.80[ASN][1000 genomes]
rs10736094	0.80[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs10748645	0.83[ASN][1000 genomes]
rs10748647	0.80[ASN][1000 genomes]
rs10748648	0.80[ASN][1000 genomes]
rs10786229	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10786234	0.82[ASN][1000 genomes]
rs10786236	0.82[ASN][1000 genomes]
rs10882651	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10882652	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10882666	0.83[ASN][1000 genomes]
rs10882673	0.80[ASN][1000 genomes]
rs10882674	0.80[ASN][1000 genomes]
rs10882675	0.80[ASN][1000 genomes]
rs10882676	0.80[ASN][1000 genomes]
rs11188486	0.83[ASN][1000 genomes]
rs11188497	0.80[ASN][1000 genomes]
rs11188513	0.80[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11517041	0.83[ASN][1000 genomes]
rs12244559	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1342790	0.80[ASN][1000 genomes]
rs1573112	0.80[ASN][1000 genomes]
rs1933167	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1935816	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2105359	0.85[AFR][1000 genomes]
rs2153913	0.82[ASN][1000 genomes]
rs2153914	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2185818	0.82[ASN][1000 genomes]
rs2297788	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2901872	0.83[ASN][1000 genomes]
rs3176890	0.80[ASN][1000 genomes]
rs3176891	0.80[ASN][1000 genomes]
rs3181129	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3181131	0.80[ASN][1000 genomes]
rs3181132	0.80[ASN][1000 genomes]
rs3892344	0.80[ASN][1000 genomes]
rs3901451	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3929900	0.82[ASN][1000 genomes]
rs4074424	0.80[ASN][1000 genomes]
rs4075310	0.80[ASN][1000 genomes]
rs4396219	0.83[ASN][1000 genomes]
rs4406763	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4412693	0.80[ASN][1000 genomes]
rs4539246	0.80[ASN][1000 genomes]
rs4614366	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4917705	0.81[ASN][1000 genomes]
rs4917707	0.81[ASN][1000 genomes]
rs4917714	0.80[ASN][1000 genomes]
rs4917715	0.80[ASN][1000 genomes]
rs4918968	0.82[ASN][1000 genomes]
rs4918969	0.83[ASN][1000 genomes]
rs4918973	0.88[EUR][1000 genomes]
rs6584013	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6584027	0.82[ASN][1000 genomes]
rs6584030	0.83[ASN][1000 genomes]
rs7075081	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7079312	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7083960	0.80[ASN][1000 genomes]
rs7096248	0.85[AFR][1000 genomes]
rs7097074	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7894648	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7913082	0.83[ASN][1000 genomes]
rs7914286	0.83[ASN][1000 genomes]
rs7920801	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv895907	chr10:97529318-97686064	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10786237	ENTPD1	cis	multi-tissue	Pritchard
rs10786237	ENTPD1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97553000-97576200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:97558800-97566200	Weak transcription	Primary B cells from peripheral blood	blood
3	chr10:97558800-97566400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:97558800-97570600	Weak transcription	Monocytes-CD14+_RO01746	blood

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