Variant report

Variant	rs7920801
Chromosome Location	chr10:97431839-97431840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 111 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10736093	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs10748634	0.87[JPT][hapmap]
rs10748638	0.93[JPT][hapmap]
rs10748642	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs10748643	0.88[CHB][hapmap];0.93[JPT][hapmap];0.81[YRI][hapmap]
rs10748648	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs10786228	0.88[JPT][hapmap]
rs10786229	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10786236	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs10786237	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10882645	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882646	0.83[JPT][hapmap]
rs10882647	0.95[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882651	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882656	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs10882657	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs10882660	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs10882664	0.87[JPT][hapmap]
rs10882665	0.87[JPT][hapmap]
rs10882673	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs10882675	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs10882676	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs11188414	0.89[JPT][hapmap]
rs11188416	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11188425	0.80[ASN][1000 genomes]
rs11188486	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs11188497	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs12244124	0.95[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12244559	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12251664	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12267876	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1268608	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1340837	0.83[CHB][hapmap]
rs1342790	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs1342791	0.87[JPT][hapmap]
rs1418709	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs1573112	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs1933165	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs1933167	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1933169	0.83[JPT][hapmap]
rs1935816	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2153913	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs2153914	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap]
rs2185818	0.88[CHB][hapmap];0.81[JPT][hapmap];0.81[YRI][hapmap]
rs2211002	0.87[JPT][hapmap]
rs2226163	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs2275273	0.93[JPT][hapmap]
rs2275759	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs2297788	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2861147	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs2861148	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs2861149	0.83[JPT][hapmap]
rs2901873	0.87[JPT][hapmap]
rs2986401	0.95[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3176881	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs3176891	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs3181123	0.87[JPT][hapmap]
rs3181124	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs3181129	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs3181131	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs3750700	0.93[JPT][hapmap]
rs3750701	0.93[JPT][hapmap]
rs3793749	0.95[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3814159	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs3901451	0.84[AMR][1000 genomes]
rs3929900	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs3934409	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs3949478	0.87[JPT][hapmap]
rs4074424	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs4075310	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs4075311	0.83[CHB][hapmap]
rs4290159	0.81[JPT][hapmap]
rs4396219	0.88[CHB][hapmap];0.93[JPT][hapmap];0.81[YRI][hapmap]
rs4406763	0.82[AMR][1000 genomes]
rs4431963	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs4551688	0.88[CHB][hapmap];0.93[JPT][hapmap];0.81[YRI][hapmap]
rs4582902	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs4614366	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs4918950	0.83[JPT][hapmap]
rs4918960	0.87[ASN][1000 genomes]
rs4918962	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs496426	0.93[JPT][hapmap]
rs5014871	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs501819	0.95[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs507017	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs535449	0.95[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6584013	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6584022	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6584023	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs6584027	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs7067762	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs7069943	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7071836	0.88[CHB][hapmap];0.93[JPT][hapmap];0.81[YRI][hapmap]
rs7074403	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs7075081	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7077566	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs7079312	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7086986	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs7088584	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs7095587	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs7096317	0.89[CHB][hapmap];0.88[JPT][hapmap]
rs7097074	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7894648	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902190	0.82[JPT][hapmap]
rs7909569	0.83[JPT][hapmap]
rs945958	0.83[JPT][hapmap]
rs9663413	0.95[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv2760117	chr10:97426086-97436264	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7920801	ENTPD1	cis	multi-tissue	Pritchard
rs7920801	ENTPD1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97416600-97441000	Weak transcription	Spleen	Spleen
2	chr10:97416800-97441600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:97416800-97442400	Weak transcription	Small Intestine	intestine
4	chr10:97416800-97443400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:97417000-97434800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr10:97417000-97434800	Weak transcription	Ovary	ovary
7	chr10:97417000-97434800	Weak transcription	HUVEC	blood vessel
8	chr10:97417000-97436200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:97417000-97436400	Weak transcription	HMEC	breast
10	chr10:97417000-97437400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr10:97417000-97439800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:97417000-97439800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr10:97417000-97439800	Weak transcription	Brain Substantia Nigra	brain
14	chr10:97417000-97441000	Weak transcription	HSMMtube	muscle
15	chr10:97417000-97442400	Weak transcription	Aorta	Aorta
16	chr10:97417000-97444200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:97417000-97445200	Weak transcription	Colonic Mucosa	Colon
18	chr10:97417000-97445800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr10:97417000-97445800	Weak transcription	NHLF	lung
20	chr10:97417200-97435400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr10:97417200-97435400	Weak transcription	Stomach Mucosa	stomach
22	chr10:97417200-97435600	Weak transcription	NH-A	brain
23	chr10:97417200-97436400	Weak transcription	NHDF-Ad	bronchial
24	chr10:97417200-97437400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr10:97417200-97438800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr10:97417200-97438800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:97417200-97439000	Weak transcription	Fetal Brain Male	brain
28	chr10:97417200-97439600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr10:97417200-97439800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr10:97417200-97440000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr10:97417200-97441000	Weak transcription	Thymus	Thymus
32	chr10:97417200-97441800	Weak transcription	Brain Angular Gyrus	brain
33	chr10:97417200-97442400	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr10:97417200-97444400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr10:97417200-97445800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr10:97417400-97432600	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr10:97417400-97439800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr10:97417600-97439000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr10:97421800-97441800	Weak transcription	Gastric	stomach
40	chr10:97422000-97434400	Weak transcription	A549	lung
41	chr10:97423000-97452000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr10:97423600-97439000	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr10:97423600-97441000	Weak transcription	Lung	lung
44	chr10:97423600-97441800	Weak transcription	Esophagus	oesophagus
45	chr10:97424000-97435400	Weak transcription	HepG2	liver
46	chr10:97424000-97439600	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr10:97424000-97440000	Weak transcription	Psoas Muscle	Psoas
48	chr10:97424000-97448200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr10:97424200-97434400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr10:97424200-97435800	Weak transcription	Fetal Thymus	thymus

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