Variant report

Variant	rs4918960
Chromosome Location	chr10:97472570-97472571
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10736092	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10748642	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10748643	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10748645	0.88[AMR][1000 genomes]
rs10748647	0.88[AMR][1000 genomes]
rs10748648	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10748649	0.90[AMR][1000 genomes]
rs10786229	0.91[ASN][1000 genomes]
rs10882645	0.81[ASN][1000 genomes]
rs10882647	0.81[ASN][1000 genomes]
rs10882651	0.88[ASN][1000 genomes]
rs10882652	0.87[ASN][1000 genomes]
rs10882655	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10882656	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10882657	0.82[AFR][1000 genomes]
rs10882660	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10882663	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10882666	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10882673	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10882674	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11188445	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11188446	0.82[AFR][1000 genomes]
rs11188449	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11188452	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11188460	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11188465	0.83[AFR][1000 genomes]
rs11188486	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs11188497	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12244559	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12251664	0.81[ASN][1000 genomes]
rs1342790	0.90[AMR][1000 genomes]
rs1418709	0.80[AFR][1000 genomes]
rs1539433	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1933165	0.82[AFR][1000 genomes]
rs1933167	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1933172	0.82[AFR][1000 genomes]
rs2051052	0.85[AMR][1000 genomes]
rs2095713	0.82[AFR][1000 genomes]
rs2153913	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2185818	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2275759	0.86[AMR][1000 genomes]
rs2297788	0.90[ASN][1000 genomes]
rs2861147	0.87[AFR][1000 genomes]
rs2861148	0.82[AFR][1000 genomes]
rs2901872	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs3176890	0.90[AMR][1000 genomes]
rs3181131	0.90[AMR][1000 genomes]
rs3181132	0.90[AMR][1000 genomes]
rs3814159	0.82[AFR][1000 genomes]
rs3892344	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs3934409	0.82[AFR][1000 genomes]
rs4074424	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4075310	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4322324	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4336961	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4381306	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4396219	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4431963	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4551688	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4625389	0.85[AMR][1000 genomes]
rs4917714	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4917715	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4918962	0.82[AFR][1000 genomes]
rs4918968	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4918974	0.87[AMR][1000 genomes]
rs5014871	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6584013	0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6584018	0.82[AFR][1000 genomes]
rs6584022	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6584023	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6584030	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7069030	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7071836	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7074403	0.86[AMR][1000 genomes]
rs7075081	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7079312	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7083411	0.87[AMR][1000 genomes]
rs7083960	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7086986	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7088584	0.87[AMR][1000 genomes]
rs7088961	0.89[AMR][1000 genomes]
rs7094382	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7094484	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7095587	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7096317	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7097074	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7097489	0.80[AFR][1000 genomes]
rs7099844	0.83[AFR][1000 genomes]
rs7894648	0.87[ASN][1000 genomes]
rs7913082	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7920801	0.87[ASN][1000 genomes]
rs9663413	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4918960	TCTN3	Cis_1M	lymphoblastoid	RTeQTL
rs4918960	ENTPD1	Cis_1M	lymphoblastoid	RTeQTL
rs4918960	ALDH18A1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97458800-97481400	Weak transcription	Primary B cells from cord blood	blood
2	chr10:97469400-97475600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr10:97470000-97476200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr10:97471800-97480000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:97472000-97472600	Enhancers	Placenta	Placenta

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