Variant report

Variant	rs3814159
Chromosome Location	chr10:97515137-97515138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFATC1	chr10:97515053-97517578	GM12878	blood:	n/a	n/a
2	RUNX3	chr10:97515028-97516089	GM12878	blood:	n/a	n/a
3	SP1	chr10:97515100-97515648	GM12878	blood:	n/a	n/a
4	POLR2A	chr10:97514833-97520109	GM12891	blood:	n/a	n/a
5	CREB1	chr10:97515083-97515721	GM12878	blood:	n/a	n/a
6	ELF1	chr10:97515110-97515646	GM12878	blood:	n/a	n/a
7	POLR2A	chr10:97514706-97520659	GM12878	blood:	n/a	n/a
8	TBL1XR1	chr10:97514908-97519757	GM12878	blood:	n/a	n/a
9	RFX5	chr10:97515022-97515592	HepG2	liver:	n/a	n/a
10	SETDB1	chr10:97515004-97515702	U2OS	brain:	n/a	n/a
11	KAP1	chr10:97515124-97515626	HEK293	kidney:	n/a	n/a
12	YY1	chr10:97514845-97515513	GM12878	blood:	n/a	n/a
13	POLR2A	chr10:97515056-97520623	GM12878	blood:	n/a	n/a
14	POLR2A	chr10:97514895-97520560	GM12878	blood:	n/a	n/a
15	RELA	chr10:97515082-97517421	GM19099	blood:	n/a	n/a
16	CUX1	chr10:97515135-97516867	GM12878	blood:	n/a	n/a
17	CREB1	chr10:97514964-97517574	GM12878	blood:	n/a	n/a
18	SPI1	chr10:97515045-97515537	HL-60	blood:	n/a	n/a
19	POLR2A	chr10:97515083-97519247	GM18526	blood:	n/a	n/a
20	BCLAF1	chr10:97515135-97518951	GM12878	blood:	n/a	chr10:97518560-97518569 chr10:97517901-97517910
21	STAT5A	chr10:97515043-97517568	GM12878	blood:	n/a	chr10:97516797-97516805 chr10:97516619-97516627
22	NFIC	chr10:97514909-97516636	GM12878	blood:	n/a	n/a
23	POLR2A	chr10:97515084-97519972	GM12892	blood:	n/a	n/a
24	YY1	chr10:97515127-97515507	GM12878	blood:	n/a	n/a
25	POLR2A	chr10:97514910-97520584	GM12891	blood:	n/a	n/a
26	POU2F2	chr10:97515115-97519316	GM12878	blood:	n/a	chr10:97518600-97518613
27	TBP	chr10:97515032-97519087	GM12878	blood:	n/a	n/a
28	CHD1	chr10:97515071-97519699	GM12878	blood:	n/a	n/a
29	POLR2A	chr10:97515084-97520516	GM12892	blood:	n/a	n/a
30	WRNIP1	chr10:97514939-97515561	GM12878	blood:	n/a	n/a
31	FOXM1	chr10:97515120-97516024	GM12878	blood:	n/a	n/a
32	NFE2	chr10:97515065-97515587	GM12878	blood:	n/a	n/a
33	RFX5	chr10:97514782-97516411	GM12878	blood:	n/a	n/a
34	NFYB	chr10:97515079-97515610	GM12878	blood:	n/a	n/a
35	POLR2A	chr10:97514961-97520461	GM12878	blood:	n/a	n/a
36	MTA3	chr10:97515000-97519909	GM12878	blood:	n/a	n/a
37	RFX5	chr10:97515092-97515884	H1-hESC	embryonic stem cell:	n/a	n/a
38	POLR2A	chr10:97515119-97520237	GM12891	blood:	n/a	n/a
39	POLR2A	chr10:97514852-97520542	GM12891	blood:	n/a	n/a
40	RUNX3	chr10:97515100-97516957	GM12878	blood:	n/a	n/a
41	RELA	chr10:97514937-97517454	GM18505	blood:	n/a	n/a
42	PML	chr10:97514891-97519627	GM12878	blood:	n/a	chr10:97519188-97519196
43	RFX5	chr10:97515021-97515777	SK-N-SH	brain:	n/a	n/a
44	YY1	chr10:97515129-97515523	GM12891	blood:	n/a	n/a
45	STAT3	chr10:97515112-97516121	GM12878	blood:	n/a	n/a
46	RELA	chr10:97514995-97519238	GM12891	blood:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCTN3-1	chr10:97512963-97516471	ENSG00000226688.1
2	lnc-TCTN3-1	chr10:97512963-97516471	NONHSAT015766

Variant related genes	Relation type
ENTPD1	TF binding region

Extended variants
information (count: 154 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:151)

rs_ID	r²[population]
rs10736092	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10736093	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10736094	0.84[ASN][1000 genomes]
rs10748634	0.94[JPT][hapmap]
rs10748638	0.89[JPT][hapmap]
rs10748642	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.84[MEX][hapmap];0.86[MKK][hapmap];0.83[TSI][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10748643	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.84[MEX][hapmap];0.84[MKK][hapmap];0.83[TSI][hapmap];0.83[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748645	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10748647	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10748648	0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10748649	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10786228	0.88[JPT][hapmap]
rs10786234	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10786236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10882646	0.94[JPT][hapmap]
rs10882647	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs10882651	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs10882652	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs10882655	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10882656	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10882657	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882659	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10882660	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10882663	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10882664	0.85[CHD][hapmap];0.94[JPT][hapmap]
rs10882665	0.85[CHD][hapmap];0.94[JPT][hapmap]
rs10882666	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10882673	0.94[CHB][hapmap];0.89[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10882674	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10882675	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882676	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11188414	0.89[JPT][hapmap]
rs11188445	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11188446	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188449	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11188452	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11188460	0.92[ASN][1000 genomes]
rs11188465	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188486	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11188495	0.84[AMR][1000 genomes]
rs11188497	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11188513	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11517041	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11596004	0.86[JPT][hapmap]
rs12244124	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs12244559	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs1340837	0.94[CHB][hapmap]
rs1342790	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1342791	0.85[CHD][hapmap];0.94[JPT][hapmap]
rs1418709	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1539433	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1573112	1.00[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1891534	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1933165	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1933169	0.94[JPT][hapmap]
rs1933172	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2051052	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.84[ASN][1000 genomes]
rs2095713	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2153913	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2153914	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2185818	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.91[LWK][hapmap];0.84[MKK][hapmap];0.83[TSI][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2211002	0.94[JPT][hapmap]
rs2226163	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2275273	0.89[JPT][hapmap]
rs2275759	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.84[ASN][1000 genomes]
rs2297788	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs2861147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2861148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2861149	0.94[JPT][hapmap]
rs2861152	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2901872	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2901873	0.85[CHD][hapmap];0.94[JPT][hapmap]
rs2986401	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs3176881	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3176890	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3176891	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3181123	0.85[CHD][hapmap];0.94[JPT][hapmap]
rs3181124	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3181129	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs3181131	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.84[MEX][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3181132	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3750700	0.89[JPT][hapmap]
rs3750701	0.89[JPT][hapmap]
rs3793749	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs3892344	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3929900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3934409	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3949478	0.85[CHD][hapmap];0.94[JPT][hapmap]
rs4074424	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4075310	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4075311	0.94[CHB][hapmap];0.82[TSI][hapmap]
rs4290159	0.82[JPT][hapmap]
rs4303172	0.81[CHB][hapmap]
rs4322324	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4336961	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4381306	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4396219	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.84[MEX][hapmap];0.84[MKK][hapmap];0.81[TSI][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4412693	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4431963	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.84[MEX][hapmap];0.81[MKK][hapmap];0.81[TSI][hapmap];0.80[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4539246	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4551688	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.84[MEX][hapmap];0.84[MKK][hapmap];0.83[TSI][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4582902	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4614366	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs4625389	0.82[AMR][1000 genomes]
rs4917705	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4917707	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4917714	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4917715	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4918950	0.94[JPT][hapmap]
rs4918960	0.82[AFR][1000 genomes]
rs4918962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4918968	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4918969	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4918971	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs496426	0.89[JPT][hapmap]
rs5014871	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs501819	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs535449	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs6584017	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6584018	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6584022	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6584023	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6584027	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6584030	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7067762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7069030	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7071836	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.84[MEX][hapmap];0.91[MKK][hapmap];0.83[TSI][hapmap];0.83[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072572	0.80[ASN][1000 genomes]
rs7074403	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7077566	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7083411	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7083960	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7086986	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7088584	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.84[MEX][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7088961	0.84[ASN][1000 genomes]
rs7094382	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7094484	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7095587	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7096317	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7097489	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7099844	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7478595	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7894648	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs7902190	0.94[JPT][hapmap]
rs7909569	0.94[JPT][hapmap]
rs7913082	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7914286	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7920801	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs7921242	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs945958	0.94[JPT][hapmap]
rs9663413	0.82[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs3814159	ALDH18A1	cis	cerebellum	SCAN
rs3814159	ENTPD1	Cis_1M	lymphoblastoid	RTeQTL
rs3814159	TCTN3	cis	lymphoblastoid	seeQTL
rs3814159	ENTPD1	cis	multi-tissue	Pritchard
rs3814159	ALDH18A1	Cis_1M	lymphoblastoid	RTeQTL
rs3814159	ANKRD2	cis	parietal	SCAN
rs3814159	ENTPD1	cis	lymphoblastoid	seeQTL

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97514200-97515400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr10:97514400-97515200	Enhancers	Primary B cells from cord blood	blood
3	chr10:97514600-97515400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:97514600-97515600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr10:97514600-97516800	Active TSS	Primary hematopoietic stem cells	blood
6	chr10:97514800-97515200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr10:97514800-97515200	Flanking Active TSS	GM12878-XiMat	blood
8	chr10:97514800-97515400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:97514800-97515600	Enhancers	Primary B cells from peripheral blood	blood
10	chr10:97515000-97515200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
11	chr10:97515000-97515200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
12	chr10:97515000-97515200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr10:97515000-97515200	Enhancers	Small Intestine	intestine
14	chr10:97515000-97515400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr10:97515000-97515400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr10:97515000-97515400	Enhancers	HUVEC	blood vessel
17	chr10:97515000-97515600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
18	chr10:97515000-97515600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr10:97515000-97516200	Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr10:97515000-97516600	Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr10:97515000-97518200	Active TSS	Duodenum Smooth Muscle	Duodenum
22	chr10:97515000-97518400	Active TSS	Stomach Smooth Muscle	stomach

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