Variant report

Variant	rs4290159
Chromosome Location	chr10:97409786-97409787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97408175..97410101-chr10:97411776..97414695,3	MCF-7	breast:
2	chr10:97408476..97410603-chr10:97424480..97427139,2	K562	blood:
3	chr10:97401313..97403969-chr10:97407292..97409828,2	K562	blood:
4	chr10:97408761..97411732-chr10:97414860..97417411,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000059573	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10159941	0.82[CHB][hapmap]
rs10509687	0.91[CHB][hapmap]
rs10736093	0.83[JPT][hapmap]
rs10748634	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs10748635	0.81[CHB][hapmap]
rs10748637	0.82[CHB][hapmap]
rs10748638	0.92[CHB][hapmap];0.88[JPT][hapmap];0.87[AFR][1000 genomes]
rs10748642	0.83[JPT][hapmap]
rs10748643	0.83[JPT][hapmap]
rs10786228	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10786230	0.82[CHB][hapmap]
rs10786235	0.82[CHB][hapmap]
rs10786236	0.83[JPT][hapmap]
rs10882646	1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10882651	0.83[JPT][hapmap]
rs10882652	0.83[JPT][hapmap]
rs10882653	0.82[CHB][hapmap]
rs10882664	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs10882665	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs10882670	0.82[CHB][hapmap]
rs11188414	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188425	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11188459	0.82[CHB][hapmap]
rs11188485	0.82[CHB][hapmap]
rs11188488	0.82[CHB][hapmap]
rs11188497	0.86[JPT][hapmap]
rs11596004	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs11596976	0.80[ASN][1000 genomes]
rs12262943	0.82[CHB][hapmap]
rs1342791	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs1573112	0.83[JPT][hapmap]
rs17111041	0.91[CHB][hapmap]
rs1933166	0.82[CHB][hapmap]
rs1933169	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs1953710	0.82[CHB][hapmap]
rs2211002	1.00[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs2225893	0.91[CHB][hapmap]
rs2275273	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2861148	0.88[JPT][hapmap]
rs2861149	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs2901873	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs3176883	0.82[CHB][hapmap]
rs3181123	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs3181124	0.83[JPT][hapmap]
rs3181131	0.83[JPT][hapmap]
rs3750700	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3750701	1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3793748	0.91[CHB][hapmap]
rs3814159	0.82[JPT][hapmap]
rs3934409	0.83[JPT][hapmap]
rs3949478	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs4075310	0.83[JPT][hapmap]
rs4396219	0.83[JPT][hapmap]
rs4431963	0.82[JPT][hapmap]
rs4457685	0.82[CHB][hapmap]
rs4501930	0.92[CHB][hapmap]
rs4551688	0.83[JPT][hapmap]
rs4582902	0.83[JPT][hapmap]
rs4917699	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4918950	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs4918964	0.91[CHB][hapmap]
rs496426	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs497331	0.91[CHB][hapmap]
rs499714	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs571505	0.91[CHB][hapmap]
rs6584026	0.82[CHB][hapmap]
rs6584027	0.83[JPT][hapmap]
rs6584028	0.82[CHB][hapmap]
rs6584033	0.82[CHB][hapmap]
rs7069234	0.82[CHB][hapmap]
rs7071836	0.83[JPT][hapmap]
rs7073723	0.82[CHB][hapmap]
rs7074403	0.83[JPT][hapmap]
rs7081414	0.82[CHB][hapmap]
rs7088584	0.83[JPT][hapmap]
rs7092594	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894648	0.83[JPT][hapmap]
rs7902190	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs7905653	0.82[CHB][hapmap]
rs7909569	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7915345	0.82[CHB][hapmap]
rs7918235	0.82[CHB][hapmap]
rs7920801	0.81[JPT][hapmap]
rs7920850	0.82[CHB][hapmap]
rs945958	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs9787589	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97364000-97411000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr10:97364800-97411000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:97376400-97411400	Weak transcription	Psoas Muscle	Psoas
4	chr10:97376400-97415200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:97376600-97415000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr10:97378600-97414200	Weak transcription	Fetal Heart	heart
7	chr10:97383000-97411200	Strong transcription	Placenta	Placenta
8	chr10:97383800-97410200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr10:97386600-97411000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:97388800-97411000	Weak transcription	Fetal Brain Male	brain
11	chr10:97389600-97413200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:97389800-97413200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:97390000-97411200	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr10:97394400-97411400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr10:97399800-97413600	Strong transcription	Dnd41	blood
16	chr10:97400000-97412600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr10:97400800-97411200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr10:97401000-97415200	Weak transcription	Colon Smooth Muscle	Colon
19	chr10:97401200-97411000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr10:97402200-97415200	Weak transcription	Right Ventricle	heart
21	chr10:97402600-97410000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr10:97402600-97411000	Weak transcription	Thymus	Thymus
23	chr10:97402800-97410000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr10:97402800-97410800	Weak transcription	Brain Substantia Nigra	brain
25	chr10:97402800-97411000	Weak transcription	Brain Hippocampus Middle	brain
26	chr10:97402800-97411000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr10:97402800-97415200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr10:97403000-97410800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr10:97403000-97410800	Weak transcription	Fetal Kidney	kidney
30	chr10:97403000-97411000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr10:97403000-97411000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr10:97403000-97411200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:97403000-97411200	Weak transcription	Left Ventricle	heart
34	chr10:97403000-97414400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr10:97403000-97415400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr10:97404000-97410400	Genic enhancers	Fetal Intestine Small	intestine
37	chr10:97404000-97411200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:97404000-97413800	Strong transcription	Fetal Muscle Leg	muscle
39	chr10:97404200-97410000	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr10:97404200-97410600	Genic enhancers	Fetal Intestine Large	intestine
41	chr10:97404200-97411400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr10:97404200-97412600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr10:97404200-97413000	Strong transcription	HSMM	muscle
44	chr10:97404200-97413200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr10:97404400-97411000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr10:97404400-97413000	Strong transcription	NH-A	brain
47	chr10:97404400-97413200	Strong transcription	Fetal Muscle Trunk	muscle
48	chr10:97404600-97412200	Strong transcription	Primary hematopoietic stem cells	blood
49	chr10:97404600-97413800	Strong transcription	Fetal Stomach	stomach
50	chr10:97404800-97411400	Strong transcription	Liver	Liver

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