Variant report

Variant	rs4501930
Chromosome Location	chr10:97496989-97496990
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10159941	0.92[CHB][hapmap];0.85[JPT][hapmap]
rs10509687	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs10748634	1.00[CEU][hapmap];0.92[CHB][hapmap];0.82[CHD][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10748635	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs10748637	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs10748638	0.93[CHB][hapmap]
rs10786228	0.84[CHB][hapmap]
rs10786230	0.94[ASW][hapmap];0.92[CHB][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap]
rs10786233	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10786235	0.94[ASW][hapmap];0.92[CHB][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap]
rs10882646	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10882653	0.94[ASW][hapmap];0.92[CHB][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap]
rs10882664	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10882665	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[LWK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10882670	0.92[CHB][hapmap];0.85[JPT][hapmap]
rs11188414	0.84[CHB][hapmap]
rs11188459	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs11188485	0.92[CHB][hapmap]
rs11188488	0.92[CHB][hapmap]
rs11596004	0.85[CEU][hapmap];0.84[CHB][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11596976	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12262943	0.92[CHB][hapmap]
rs1342791	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.81[LWK][hapmap];0.85[EUR][1000 genomes]
rs17111041	0.85[CHB][hapmap]
rs1890186	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1933165	0.80[ASN][1000 genomes]
rs1933166	0.94[ASW][hapmap];0.92[CHB][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap]
rs1933169	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1953710	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs2211002	1.00[CEU][hapmap];0.92[CHB][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2225893	0.94[ASW][hapmap];0.85[CHB][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap]
rs2275273	0.85[CHB][hapmap]
rs2485643	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2861147	0.80[ASN][1000 genomes]
rs2861148	0.80[ASN][1000 genomes]
rs2861149	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901873	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[LWK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs3176883	0.88[ASW][hapmap];0.92[CHB][hapmap];0.82[CHD][hapmap];0.88[GIH][hapmap];0.86[JPT][hapmap]
rs3176885	0.85[EUR][1000 genomes]
rs3181123	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.85[EUR][1000 genomes]
rs3750700	0.85[CHB][hapmap]
rs3750701	0.85[CHB][hapmap]
rs3793748	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs3934409	0.80[ASN][1000 genomes]
rs3949478	1.00[CHB][hapmap];0.91[CHD][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4244319	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4290159	0.92[CHB][hapmap]
rs4336961	0.80[ASN][1000 genomes]
rs4457685	0.94[ASW][hapmap];0.92[CHB][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap]
rs479505	0.83[EUR][1000 genomes]
rs4918950	1.00[CEU][hapmap];0.92[CHB][hapmap]
rs4918964	1.00[CHB][hapmap]
rs496426	1.00[CEU][hapmap];0.92[CHB][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs497331	0.85[CHB][hapmap]
rs540963	0.83[EUR][1000 genomes]
rs57126367	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs571505	0.85[CHB][hapmap]
rs6584026	0.88[ASW][hapmap];0.92[CHB][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap]
rs6584028	0.94[ASW][hapmap];0.92[CHB][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap]
rs6584033	0.94[ASW][hapmap];0.92[CHB][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap]
rs7069234	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs7072572	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7073723	0.94[ASW][hapmap];0.92[CHB][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap]
rs7081414	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs7094382	0.80[ASN][1000 genomes]
rs7094484	0.80[ASN][1000 genomes]
rs7094855	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7098750	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs7893677	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7902190	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7905653	0.92[CHB][hapmap];0.83[JPT][hapmap]
rs7909569	1.00[CEU][hapmap];0.92[CHB][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7915345	0.94[ASW][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap]
rs7919196	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7920850	0.94[ASW][hapmap];0.92[CHB][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap]
rs945958	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9787589	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97494000-97498200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr10:97496800-97497200	Enhancers	Cortex derived primary cultured neurospheres	brain

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