Variant report

Variant	rs1890186
Chromosome Location	chr10:97393640-97393641
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10748634	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882646	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188414	0.81[AFR][1000 genomes]
rs11596004	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11596976	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1933169	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2211002	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2275273	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2485643	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2861149	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3750700	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs3750701	0.82[ASN][1000 genomes]
rs3949478	0.82[ASN][1000 genomes]
rs4244319	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4501930	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs479505	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs496426	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs496641	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs540145	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs540963	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs546138	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs549042	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7072572	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7092594	0.81[AFR][1000 genomes]
rs7893677	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7909569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs945958	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9787589	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97364000-97409200	Strong transcription	Primary T cells from cord blood	blood
2	chr10:97364000-97411000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:97364400-97403200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr10:97364800-97403400	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr10:97364800-97411000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:97365000-97403000	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr10:97365000-97403400	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr10:97376200-97400600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr10:97376400-97411400	Weak transcription	Psoas Muscle	Psoas
10	chr10:97376400-97415200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:97376600-97415000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr10:97378600-97414200	Weak transcription	Fetal Heart	heart
13	chr10:97379800-97403200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:97380200-97399200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:97380200-97403200	Strong transcription	Fetal Muscle Leg	muscle
16	chr10:97380200-97403400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr10:97380200-97408800	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr10:97380600-97403000	Strong transcription	NH-A	brain
19	chr10:97380600-97403200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:97380600-97403200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:97380600-97408000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr10:97380800-97409000	Strong transcription	Osteobl	bone
23	chr10:97381200-97403400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr10:97381600-97403000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr10:97383000-97411200	Strong transcription	Placenta	Placenta
26	chr10:97383200-97403000	Strong transcription	Fetal Muscle Trunk	muscle
27	chr10:97383400-97398800	Strong transcription	Dnd41	blood
28	chr10:97383400-97400200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr10:97383400-97403000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr10:97383800-97394800	Strong transcription	H9 Cell Line	embryonic stem cell
31	chr10:97383800-97395400	Strong transcription	HSMMtube	muscle
32	chr10:97383800-97397000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr10:97383800-97403000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr10:97383800-97403000	Strong transcription	Fetal Brain Female	brain
35	chr10:97383800-97403200	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr10:97383800-97403200	Strong transcription	GM12878-XiMat	blood
37	chr10:97383800-97409400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr10:97383800-97410200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr10:97384000-97397200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr10:97384000-97397400	Strong transcription	Adipose Nuclei	Adipose
41	chr10:97384000-97402800	Strong transcription	HSMM	muscle
42	chr10:97384000-97403000	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr10:97384000-97403200	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr10:97384000-97403200	Strong transcription	Liver	Liver
45	chr10:97384200-97397000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr10:97384200-97403000	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr10:97384400-97397200	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr10:97384400-97402800	Strong transcription	HUVEC	blood vessel
49	chr10:97384600-97402600	Strong transcription	Placenta Amnion	Placenta Amnion
50	chr10:97385200-97394200	Weak transcription	Small Intestine	intestine

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