Variant report

Variant	rs2485643
Chromosome Location	chr10:97383842-97383843
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10509687	0.85[AFR][1000 genomes]
rs10748634	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748635	0.80[AFR][1000 genomes]
rs10882646	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11596004	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11596976	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1890186	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1933169	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2211002	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2225892	0.82[AFR][1000 genomes]
rs2225893	0.81[AFR][1000 genomes]
rs2275273	0.80[ASN][1000 genomes]
rs2861149	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3750700	0.82[ASN][1000 genomes]
rs3750701	0.82[ASN][1000 genomes]
rs3763705	0.80[AFR][1000 genomes]
rs3763706	0.80[AFR][1000 genomes]
rs3793748	0.83[AFR][1000 genomes]
rs3949478	0.82[ASN][1000 genomes]
rs4244319	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4501930	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs479505	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4917698	0.81[AFR][1000 genomes]
rs4918956	0.80[AFR][1000 genomes]
rs496426	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs496641	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs524084	0.82[AFR][1000 genomes]
rs540145	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs540963	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs546138	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs549042	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs556869	0.85[AFR][1000 genomes]
rs7072572	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7073936	0.80[AFR][1000 genomes]
rs7080114	0.81[AFR][1000 genomes]
rs7893677	0.80[AMR][1000 genomes]
rs7894052	0.81[AFR][1000 genomes]
rs7909569	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920850	0.80[AFR][1000 genomes]
rs945958	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9787589	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97364000-97409200	Strong transcription	Primary T cells from cord blood	blood
2	chr10:97364000-97411000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:97364400-97403200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr10:97364600-97388400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:97364800-97403400	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr10:97364800-97411000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:97365000-97403000	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr10:97365000-97403400	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr10:97365800-97385000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:97367400-97388600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:97367600-97388400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr10:97368400-97393000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr10:97373800-97386600	Weak transcription	Fetal Brain Male	brain
14	chr10:97374000-97386400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:97374400-97386600	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr10:97375400-97387000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:97376200-97384400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr10:97376200-97400600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr10:97376400-97411400	Weak transcription	Psoas Muscle	Psoas
20	chr10:97376400-97415200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:97376600-97384800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr10:97376600-97385800	Weak transcription	Fetal Kidney	kidney
23	chr10:97376600-97415000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr10:97377800-97384600	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr10:97378000-97384000	Weak transcription	Colonic Mucosa	Colon
26	chr10:97378000-97384600	Weak transcription	Right Ventricle	heart
27	chr10:97378200-97385200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr10:97378200-97386400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr10:97378200-97387200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr10:97378200-97391800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr10:97378600-97384000	Weak transcription	Brain Anterior Caudate	brain
32	chr10:97378600-97384000	Weak transcription	Brain Germinal Matrix	brain
33	chr10:97378600-97384000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr10:97378600-97384400	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr10:97378600-97384600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr10:97378600-97384600	Weak transcription	Left Ventricle	heart
37	chr10:97378600-97385800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr10:97378600-97386400	Weak transcription	Spleen	Spleen
39	chr10:97378600-97414200	Weak transcription	Fetal Heart	heart
40	chr10:97378800-97384000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr10:97378800-97384000	Weak transcription	Primary B cells from peripheral blood	blood
42	chr10:97378800-97384000	Weak transcription	Adipose Nuclei	Adipose
43	chr10:97378800-97384000	Weak transcription	HMEC	breast
44	chr10:97378800-97384000	Weak transcription	HSMM	muscle
45	chr10:97378800-97384000	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr10:97378800-97384000	Weak transcription	NHDF-Ad	bronchial
47	chr10:97378800-97384200	Weak transcription	Hela-S3	cervix
48	chr10:97378800-97384400	Weak transcription	Brain Substantia Nigra	brain
49	chr10:97378800-97384400	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr10:97378800-97384600	Weak transcription	Brain Hippocampus Middle	brain

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