Variant report

Variant	rs479505
Chromosome Location	chr10:97360719-97360720
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97189782..97190781-chr10:97360668..97361524,4	MCF-7	breast:
2	chr10:97239375..97239913-chr10:97360587..97361534,2	MCF-7	breast:
3	chr10:97149447..97150483-chr10:97360357..97361198,4	K562	blood:
4	chr10:97134068..97135058-chr10:97360561..97361606,11	K562	blood:
5	chr10:97189856..97190852-chr10:97360581..97361516,9	MCF-7	breast:
6	chr10:97149394..97150351-chr10:97360708..97361426,3	MCF-7	breast:
7	chr10:97189854..97191679-chr10:97360563..97361585,11	K562	blood:
8	chr10:97134082..97135344-chr10:97360078..97361554,17	MCF-7	breast:
9	chr10:97149803..97150837-chr10:97360594..97361494,3	MCF-7	breast:
10	chr10:97205315..97206214-chr10:97360559..97361486,6	MCF-7	breast:
11	chr10:97205231..97206125-chr10:97360638..97361145,2	MCF-7	breast:

No data

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10748634	0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882646	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10882664	0.88[CEU][hapmap]
rs10882665	0.88[CEU][hapmap]
rs11596004	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11596976	0.89[EUR][1000 genomes]
rs12359410	0.86[CEU][hapmap]
rs1890186	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1933169	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs2211002	0.88[CEU][hapmap];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2485643	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2861149	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs4244319	0.86[EUR][1000 genomes]
rs4501930	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs4918950	0.91[CEU][hapmap]
rs496426	0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs496641	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs540145	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs540963	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs546138	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs549042	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7072572	0.83[EUR][1000 genomes]
rs7909569	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs945958	0.90[CEU][hapmap];0.90[EUR][1000 genomes]
rs9787589	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97335200-97373400	Weak transcription	Psoas Muscle	Psoas
2	chr10:97359400-97364600	Weak transcription	Placenta	Placenta
3	chr10:97359800-97361000	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr10:97359800-97361400	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr10:97360000-97361200	Enhancers	Fetal Muscle Leg	muscle
6	chr10:97360000-97361600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr10:97360000-97364000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:97360200-97360800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:97360200-97361400	Enhancers	Colon Smooth Muscle	Colon
10	chr10:97360200-97361600	Enhancers	Rectal Smooth Muscle	rectum
11	chr10:97360200-97364400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:97360200-97364600	Weak transcription	GM12878-XiMat	blood
13	chr10:97360400-97361200	Enhancers	Brain Anterior Caudate	brain
14	chr10:97360400-97361400	Enhancers	Fetal Heart	heart
15	chr10:97360400-97364400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:97360400-97364600	Enhancers	HepG2	liver
17	chr10:97360600-97360800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:97360600-97360800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr10:97360600-97360800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr10:97360600-97360800	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr10:97360600-97360800	Enhancers	Fetal Brain Female	brain
22	chr10:97360600-97361000	Enhancers	Fetal Kidney	kidney
23	chr10:97360600-97361000	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr10:97360600-97361000	Flanking Active TSS	Stomach Smooth Muscle	stomach
25	chr10:97360600-97361400	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr10:97360600-97361400	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr10:97360600-97361600	Enhancers	Fetal Intestine Small	intestine
28	chr10:97360600-97363200	Weak transcription	Right Ventricle	heart
29	chr10:97360600-97364000	Weak transcription	Right Atrium	heart

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