Variant report

Variant	rs7072572
Chromosome Location	chr10:97504302-97504303
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10748634	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10748642	0.80[ASN][1000 genomes]
rs10748643	0.80[ASN][1000 genomes]
rs10786233	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882646	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10882664	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882665	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11188465	0.80[ASN][1000 genomes]
rs11596004	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11596976	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1342791	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1890186	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1933169	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2211002	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2485643	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2861149	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2901873	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3176885	0.85[EUR][1000 genomes]
rs3181123	0.85[EUR][1000 genomes]
rs3814159	0.80[ASN][1000 genomes]
rs3949478	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4244319	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4501930	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs479505	0.83[EUR][1000 genomes]
rs496426	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs540963	0.83[EUR][1000 genomes]
rs57126367	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6584022	0.80[ASN][1000 genomes]
rs6584023	0.80[ASN][1000 genomes]
rs7071836	0.80[ASN][1000 genomes]
rs7086986	0.80[ASN][1000 genomes]
rs7094855	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7096317	0.80[ASN][1000 genomes]
rs7099844	0.80[ASN][1000 genomes]
rs7893677	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7902190	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7909569	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7919196	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs945958	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9787589	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97502000-97505600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:97502200-97505400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr10:97502600-97505400	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr10:97503000-97505400	Enhancers	Primary B cells from peripheral blood	blood
5	chr10:97503200-97504800	Weak transcription	Primary B cells from cord blood	blood
6	chr10:97503200-97506400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:97504000-97504400	Flanking Active TSS	GM12878-XiMat	blood

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