Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10786233	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10882646	0.82[ASN][1000 genomes]
rs10882664	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10882665	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11596976	0.81[ASN][1000 genomes]
rs1933165	0.80[ASN][1000 genomes]
rs1933169	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2211002	0.81[ASN][1000 genomes]
rs2861147	0.80[ASN][1000 genomes]
rs2861148	0.80[ASN][1000 genomes]
rs2861149	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3934409	0.80[ASN][1000 genomes]
rs3949478	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4244319	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4336961	0.80[ASN][1000 genomes]
rs4501930	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57126367	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7072572	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7094382	0.80[ASN][1000 genomes]
rs7094484	0.80[ASN][1000 genomes]
rs7893677	0.88[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7902190	0.81[AFR][1000 genomes]
rs7919196	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97488400-97494000	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:97488600-97491600	Enhancers	Primary B cells from cord blood	blood
3	chr10:97489000-97491200	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr10:97489000-97491400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr10:97489600-97491400	Enhancers	GM12878-XiMat	blood
6	chr10:97489800-97492200	Enhancers	Primary B cells from peripheral blood	blood
7	chr10:97489800-97493600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr10:97490000-97491200	Weak transcription	Adipose Nuclei	Adipose
9	chr10:97491000-97491200	Enhancers	Left Ventricle	heart
10	chr10:97491000-97491400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr10:97491000-97491400	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
12	chr10:97491000-97492600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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