Variant report

Variant	rs7893677
Chromosome Location	chr10:97527587-97527588
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10748634	0.82[AMR][1000 genomes]
rs10786233	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10882646	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10882660	0.80[ASN][1000 genomes]
rs10882664	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10882665	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11596004	0.85[AMR][1000 genomes]
rs11596976	0.80[AMR][1000 genomes]
rs1342791	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1418709	0.80[ASN][1000 genomes]
rs1539433	0.80[ASN][1000 genomes]
rs1890186	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1933169	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2211002	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2485643	0.80[AMR][1000 genomes]
rs2861149	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2901873	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3176885	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3181123	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3949478	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4244319	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4322324	0.83[ASN][1000 genomes]
rs4501930	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4551688	0.80[ASN][1000 genomes]
rs496426	0.82[AMR][1000 genomes]
rs57126367	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7072572	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7094855	0.88[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7097489	0.80[ASN][1000 genomes]
rs7902190	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7909569	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7919196	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9787589	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97518600-97534000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:97518800-97534000	Weak transcription	Fetal Stomach	stomach
3	chr10:97520000-97527600	Weak transcription	Small Intestine	intestine
4	chr10:97521800-97527600	Weak transcription	Aorta	Aorta
5	chr10:97521800-97537400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr10:97521800-97537400	Weak transcription	Lung	lung
7	chr10:97522200-97528000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr10:97523000-97527600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:97523000-97527600	Weak transcription	HUVEC	blood vessel
10	chr10:97526000-97533400	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr10:97526400-97529400	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
12	chr10:97526600-97529200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr10:97526600-97529200	Enhancers	Primary B cells from peripheral blood	blood
14	chr10:97527400-97527800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr10:97527400-97528200	Flanking Active TSS	Primary B cells from cord blood	blood

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