Variant report

Variant	rs9787589
Chromosome Location	chr10:97412921-97412922
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97408175..97410101-chr10:97411776..97414695,3	MCF-7	breast:
2	chr10:97411958..97414556-chr10:97414784..97416588,2	MCF-7	breast:
3	chr10:97403144..97405110-chr10:97412566..97414217,2	K562	blood:

Variant related genes	Relation type
ENSG00000059573	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10748634	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10882646	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188414	0.82[AFR][1000 genomes]
rs11596004	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11596976	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1890186	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1933169	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2211002	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2275273	0.81[AFR][1000 genomes]
rs2485643	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2861149	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3750700	0.81[AFR][1000 genomes]
rs3949478	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4244319	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4290159	0.81[AFR][1000 genomes]
rs4501930	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs479505	0.92[EUR][1000 genomes]
rs496426	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs496641	0.83[EUR][1000 genomes]
rs540963	0.92[EUR][1000 genomes]
rs7072572	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7092594	0.82[AFR][1000 genomes]
rs7893677	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7909569	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs945958	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97376400-97415200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:97376600-97415000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr10:97378600-97414200	Weak transcription	Fetal Heart	heart
4	chr10:97389600-97413200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:97389800-97413200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:97399800-97413600	Strong transcription	Dnd41	blood
7	chr10:97401000-97415200	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:97402200-97415200	Weak transcription	Right Ventricle	heart
9	chr10:97402800-97415200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr10:97403000-97414400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr10:97403000-97415400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:97404000-97413800	Strong transcription	Fetal Muscle Leg	muscle
13	chr10:97404200-97413000	Strong transcription	HSMM	muscle
14	chr10:97404200-97413200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:97404400-97413000	Strong transcription	NH-A	brain
16	chr10:97404400-97413200	Strong transcription	Fetal Muscle Trunk	muscle
17	chr10:97404600-97413800	Strong transcription	Fetal Stomach	stomach
18	chr10:97404800-97415200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr10:97406200-97413000	Strong transcription	Sigmoid Colon	Sigmoid Colon
20	chr10:97406200-97413200	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr10:97406400-97415200	Weak transcription	Brain Angular Gyrus	brain
22	chr10:97407600-97414200	Weak transcription	Stomach Mucosa	stomach
23	chr10:97407800-97415400	Weak transcription	Small Intestine	intestine
24	chr10:97408000-97413000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr10:97409000-97415200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:97409600-97413600	Strong transcription	Hela-S3	cervix
27	chr10:97409800-97413200	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr10:97409800-97413200	Strong transcription	Duodenum Mucosa	Duodenum
29	chr10:97410000-97413000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:97410000-97413200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr10:97410000-97413200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr10:97410000-97413200	Strong transcription	HUVEC	blood vessel
33	chr10:97410200-97413400	ZNF genes & repeats	GM12878-XiMat	blood
34	chr10:97410200-97413600	Strong transcription	Osteobl	bone
35	chr10:97410600-97413000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr10:97410800-97413200	Strong transcription	Primary T cells from cord blood	blood
37	chr10:97410800-97413600	Strong transcription	Stomach Smooth Muscle	stomach
38	chr10:97410800-97413800	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr10:97411000-97413000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr10:97411000-97413000	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr10:97411000-97413000	Strong transcription	NHLF	lung
42	chr10:97411000-97413800	Strong transcription	Muscle Satellite Cultured Cells	--
43	chr10:97411200-97413200	Strong transcription	Gastric	stomach
44	chr10:97411200-97413200	Strong transcription	Pancreas	Pancrea
45	chr10:97411200-97413800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr10:97411400-97413600	Strong transcription	HSMMtube	muscle
47	chr10:97411400-97415200	Weak transcription	Lung	lung
48	chr10:97411600-97413000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr10:97411600-97413000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr10:97411600-97413000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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