Variant report

Variant	rs3763706
Chromosome Location	chr10:97418098-97418099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97417025..97421162-chr10:97421538..97425770,6	K562	blood:
2	chr10:97416659..97418930-chr10:97452318..97454871,2	K562	blood:
3	chr10:97416514..97418290-chr10:97425335..97427800,2	MCF-7	breast:
4	chr10:97404418..97406039-chr10:97418042..97420106,2	K562	blood:
5	chr10:97384935..97386952-chr10:97417670..97420047,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119977	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10159941	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10509687	0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10748635	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748636	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748637	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748639	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10748640	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10748641	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10786230	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10786235	0.82[EUR][1000 genomes]
rs10882653	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1113881	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188441	0.82[ASN][1000 genomes]
rs11188459	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11188468	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11188470	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188482	0.82[EUR][1000 genomes]
rs11528098	0.82[EUR][1000 genomes]
rs17111041	0.86[ASN][1000 genomes]
rs1890187	0.86[ASN][1000 genomes]
rs1933166	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1933171	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1953710	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2225892	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2225893	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2225894	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2485643	0.80[AFR][1000 genomes]
rs3763705	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3793748	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3938778	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4244318	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs4457685	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs473251	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs476373	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs482811	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4917698	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4917700	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4917701	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4918956	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918958	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4918964	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs497331	0.86[ASN][1000 genomes]
rs5023560	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs524084	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs556869	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6584014	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6584015	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6584026	0.82[EUR][1000 genomes]
rs6584028	0.82[EUR][1000 genomes]
rs7069234	0.82[EUR][1000 genomes]
rs7073723	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7073936	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7073973	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7079911	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7080114	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7081414	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7085059	0.82[ASN][1000 genomes]
rs7894052	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905653	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7919773	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7920850	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951418	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97416600-97441000	Weak transcription	Spleen	Spleen
2	chr10:97416800-97421600	Weak transcription	Gastric	stomach
3	chr10:97416800-97423000	Weak transcription	Lung	lung
4	chr10:97416800-97423000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr10:97416800-97441600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:97416800-97442400	Weak transcription	Small Intestine	intestine
7	chr10:97416800-97443400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:97417000-97419800	Weak transcription	HSMM	muscle
9	chr10:97417000-97421600	Weak transcription	A549	lung
10	chr10:97417000-97422000	Weak transcription	Fetal Stomach	stomach
11	chr10:97417000-97422200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr10:97417000-97422800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:97417000-97422800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:97417000-97422800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr10:97417000-97422800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr10:97417000-97422800	Weak transcription	Fetal Brain Female	brain
17	chr10:97417000-97422800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr10:97417000-97423000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr10:97417000-97423000	Weak transcription	Primary T cells from cord blood	blood
20	chr10:97417000-97423000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr10:97417000-97423000	Weak transcription	Pancreas	Pancrea
22	chr10:97417000-97423200	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr10:97417000-97423200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr10:97417000-97423200	Weak transcription	Left Ventricle	heart
25	chr10:97417000-97423400	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr10:97417000-97423400	Weak transcription	Brain Hippocampus Middle	brain
27	chr10:97417000-97423800	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr10:97417000-97424000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr10:97417000-97428600	Weak transcription	Fetal Kidney	kidney
30	chr10:97417000-97434800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr10:97417000-97434800	Weak transcription	Ovary	ovary
32	chr10:97417000-97434800	Weak transcription	HUVEC	blood vessel
33	chr10:97417000-97436200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr10:97417000-97436400	Weak transcription	HMEC	breast
35	chr10:97417000-97437400	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr10:97417000-97439800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr10:97417000-97439800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr10:97417000-97439800	Weak transcription	Brain Substantia Nigra	brain
39	chr10:97417000-97441000	Weak transcription	HSMMtube	muscle
40	chr10:97417000-97442400	Weak transcription	Aorta	Aorta
41	chr10:97417000-97444200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr10:97417000-97445200	Weak transcription	Colonic Mucosa	Colon
43	chr10:97417000-97445800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr10:97417000-97445800	Weak transcription	NHLF	lung
45	chr10:97417200-97418800	Weak transcription	Fetal Intestine Small	intestine
46	chr10:97417200-97418800	Weak transcription	K562	blood
47	chr10:97417200-97419800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr10:97417200-97419800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr10:97417200-97420000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr10:97417200-97420000	Weak transcription	HepG2	liver

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