Variant report

Variant	rs2225892
Chromosome Location	chr10:97416107-97416108
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97414876..97416556-chr10:97452777..97454283,2	MCF-7	breast:
2	chr10:97375956..97378752-chr10:97415049..97416983,2	MCF-7	breast:
3	chr10:97416004..97416752-chr10:97453272..97453815,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119977	Chromatin interaction
ENSG00000059573	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10159941	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10509687	0.93[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10748635	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10748636	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10748637	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10748639	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10748640	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10748641	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10786230	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10786235	0.81[EUR][1000 genomes]
rs10882653	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1113881	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11188459	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11188468	1.00[AMR][1000 genomes]
rs11188470	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11188482	0.81[EUR][1000 genomes]
rs11528098	0.81[EUR][1000 genomes]
rs17111041	0.85[ASN][1000 genomes]
rs1890187	0.85[ASN][1000 genomes]
rs1933166	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1933171	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1953710	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2225893	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2225894	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2485643	0.82[AFR][1000 genomes]
rs3763705	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3763706	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3793748	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3938778	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4244318	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs4457685	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs473251	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs476373	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs482811	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4917698	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4917700	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4917701	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4918956	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4918958	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4918964	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs497331	0.85[ASN][1000 genomes]
rs5023560	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs524084	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs556869	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6584014	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6584015	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6584026	0.81[EUR][1000 genomes]
rs6584028	0.81[EUR][1000 genomes]
rs7069234	0.81[EUR][1000 genomes]
rs7073723	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7073936	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7073973	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7079911	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7080114	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7081414	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7894052	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7905653	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7919773	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7920850	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs951418	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97414600-97416800	Active TSS	Fetal Intestine Large	intestine
2	chr10:97414600-97416800	Active TSS	Fetal Intestine Small	intestine
3	chr10:97414600-97416800	Active TSS	NHDF-Ad	bronchial
4	chr10:97414600-97417200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:97415000-97416800	Active TSS	H1 Cell Line	embryonic stem cell
6	chr10:97415000-97416800	Active TSS	Colonic Mucosa	Colon
7	chr10:97415000-97416800	Active TSS	A549	lung
8	chr10:97415000-97417000	Active TSS	HSMMtube	muscle
9	chr10:97415000-97417000	Active TSS	NHLF	lung
10	chr10:97415200-97416200	Flanking Active TSS	Primary hematopoietic stem cells	blood
11	chr10:97415200-97416200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr10:97415200-97416400	Bivalent/Poised TSS	HepG2	liver
13	chr10:97415200-97416800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:97415200-97416800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:97415200-97416800	Active TSS	Lung	lung
16	chr10:97415200-97416800	Active TSS	Stomach Mucosa	stomach
17	chr10:97415200-97417000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:97415200-97417000	Active TSS	Aorta	Aorta
19	chr10:97415200-97417000	Active TSS	Pancreas	Pancrea
20	chr10:97415200-97417000	Active TSS	Right Atrium	heart
21	chr10:97415200-97417200	Active TSS	ES-I3 Cell Line	embryonic stem cell
22	chr10:97415200-97417200	Active TSS	H9 Cell Line	embryonic stem cell
23	chr10:97415200-97417200	Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr10:97415200-97417200	Active TSS	Rectal Smooth Muscle	rectum
25	chr10:97415400-97416600	Active TSS	Fetal Stomach	stomach
26	chr10:97415400-97416600	Active TSS	GM12878-XiMat	blood
27	chr10:97415400-97416800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr10:97415400-97416800	Active TSS	Muscle Satellite Cultured Cells	--
29	chr10:97415400-97416800	Active TSS	Placenta Amnion	Placenta Amnion
30	chr10:97415400-97417000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr10:97415400-97417000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr10:97415400-97417000	Active TSS	HUES48 Cell Line	embryonic stem cell
33	chr10:97415400-97417200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:97415400-97417200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:97415400-97417200	Active TSS	Brain Angular Gyrus	brain
36	chr10:97415600-97416200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr10:97415600-97416600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
38	chr10:97415600-97416600	Active TSS	Cortex derived primary cultured neurospheres	brain
39	chr10:97415600-97416600	Active TSS	NHEK	skin
40	chr10:97415600-97416800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr10:97415600-97416800	Active TSS	Breast Myoepithelial Primary Cells	Breast
42	chr10:97415600-97416800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr10:97415600-97416800	Active TSS	Colon Smooth Muscle	Colon
44	chr10:97415600-97416800	Active TSS	Fetal Kidney	kidney
45	chr10:97415600-97416800	Active TSS	Sigmoid Colon	Sigmoid Colon
46	chr10:97415600-97416800	Active TSS	Hela-S3	cervix
47	chr10:97415600-97416800	Active TSS	HSMM	muscle
48	chr10:97415600-97416800	Active TSS	NH-A	brain
49	chr10:97415600-97417000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
50	chr10:97415600-97417000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

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