Variant report

Variant	rs10748635
Chromosome Location	chr10:97428658-97428659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97425900..97430899-chr10:97432163..97436745,6	MCF-7	breast:
2	chr10:97420551..97423519-chr10:97425006..97428987,4	MCF-7	breast:
3	chr10:97419121..97420755-chr10:97426619..97428887,2	K562	blood:

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10159941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10509687	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10748634	0.82[CHB][hapmap]
rs10748636	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748637	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748638	0.84[CHB][hapmap]
rs10748639	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10748640	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10748641	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10786230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10786235	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.82[EUR][1000 genomes]
rs10882646	0.82[CHB][hapmap]
rs10882653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882664	0.92[CHB][hapmap]
rs10882665	0.92[CHB][hapmap]
rs10882670	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1113881	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188441	0.82[ASN][1000 genomes]
rs11188459	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11188468	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11188470	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188482	0.82[EUR][1000 genomes]
rs11188485	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11188488	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs11528098	0.82[EUR][1000 genomes]
rs12262943	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1340837	0.91[JPT][hapmap]
rs1342791	0.92[CHB][hapmap]
rs17111041	0.91[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs1890187	0.86[ASN][1000 genomes]
rs1933166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1933169	0.91[CHB][hapmap]
rs1933171	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1953710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2211002	0.82[CHB][hapmap]
rs2225892	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2225893	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2225894	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2485643	0.80[AFR][1000 genomes]
rs2861149	0.84[CHB][hapmap]
rs2901873	0.92[CHB][hapmap]
rs3176883	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3181123	0.92[CHB][hapmap]
rs3763705	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3763706	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3793748	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3938778	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3949478	0.92[CHB][hapmap]
rs4075311	0.90[JPT][hapmap];0.95[YRI][hapmap]
rs4244318	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs4290159	0.81[CHB][hapmap]
rs4457685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4501930	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs473251	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs476373	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs482811	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4917698	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4917700	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4917701	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4918950	0.82[CHB][hapmap]
rs4918956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918958	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4918964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs496426	0.82[CHB][hapmap]
rs497331	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs501603	1.00[JPT][hapmap]
rs5023560	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs524084	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs556869	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs571505	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6584014	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6584015	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6584026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[EUR][1000 genomes]
rs6584028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.82[EUR][1000 genomes]
rs6584033	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs7069234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[EUR][1000 genomes]
rs7073723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7073936	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7073973	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7079911	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7080114	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7081414	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7085059	0.82[ASN][1000 genomes]
rs7894052	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902190	1.00[CHB][hapmap]
rs7905653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7909569	0.82[CHB][hapmap]
rs7915345	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs7918235	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs7919773	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7920850	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs945958	0.82[CHB][hapmap]
rs951418	0.82[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv2760117	chr10:97426086-97436264	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97416600-97441000	Weak transcription	Spleen	Spleen
2	chr10:97416800-97441600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:97416800-97442400	Weak transcription	Small Intestine	intestine
4	chr10:97416800-97443400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:97417000-97434800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr10:97417000-97434800	Weak transcription	Ovary	ovary
7	chr10:97417000-97434800	Weak transcription	HUVEC	blood vessel
8	chr10:97417000-97436200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:97417000-97436400	Weak transcription	HMEC	breast
10	chr10:97417000-97437400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr10:97417000-97439800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:97417000-97439800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr10:97417000-97439800	Weak transcription	Brain Substantia Nigra	brain
14	chr10:97417000-97441000	Weak transcription	HSMMtube	muscle
15	chr10:97417000-97442400	Weak transcription	Aorta	Aorta
16	chr10:97417000-97444200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:97417000-97445200	Weak transcription	Colonic Mucosa	Colon
18	chr10:97417000-97445800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr10:97417000-97445800	Weak transcription	NHLF	lung
20	chr10:97417200-97430400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:97417200-97435400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr10:97417200-97435400	Weak transcription	Stomach Mucosa	stomach
23	chr10:97417200-97435600	Weak transcription	NH-A	brain
24	chr10:97417200-97436400	Weak transcription	NHDF-Ad	bronchial
25	chr10:97417200-97437400	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr10:97417200-97438800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr10:97417200-97438800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr10:97417200-97439000	Weak transcription	Fetal Brain Male	brain
29	chr10:97417200-97439600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr10:97417200-97439800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr10:97417200-97440000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr10:97417200-97441000	Weak transcription	Thymus	Thymus
33	chr10:97417200-97441800	Weak transcription	Brain Angular Gyrus	brain
34	chr10:97417200-97442400	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr10:97417200-97444400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr10:97417200-97445800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr10:97417400-97432600	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr10:97417400-97439800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr10:97417600-97439000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr10:97421800-97441800	Weak transcription	Gastric	stomach
41	chr10:97422000-97434400	Weak transcription	A549	lung
42	chr10:97423000-97429400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr10:97423000-97429600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr10:97423000-97429600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr10:97423000-97452000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:97423600-97439000	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr10:97423600-97441000	Weak transcription	Lung	lung
48	chr10:97423600-97441800	Weak transcription	Esophagus	oesophagus
49	chr10:97423800-97429000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr10:97424000-97428800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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