Variant report

Variant	rs571505
Chromosome Location	chr10:97340618-97340619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97321132..97322858-chr10:97338757..97340666,2	K562	blood:

Variant related genes	Relation type
ENSG00000095637	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10159941	0.92[CHB][hapmap];0.93[JPT][hapmap]
rs10509687	1.00[CHB][hapmap];0.83[CHD][hapmap];0.93[JPT][hapmap]
rs10748634	0.92[CHB][hapmap]
rs10748635	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10748637	0.92[CHB][hapmap];0.93[JPT][hapmap]
rs10786228	0.84[CHB][hapmap]
rs10786230	0.92[CHB][hapmap];0.93[JPT][hapmap]
rs10882621	0.88[ASN][1000 genomes]
rs10882646	0.92[CHB][hapmap]
rs10882653	0.92[CHB][hapmap];0.93[JPT][hapmap]
rs10882664	0.85[CHB][hapmap]
rs11188364	0.88[ASN][1000 genomes]
rs11188414	0.84[CHB][hapmap]
rs11188441	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188459	0.92[CHB][hapmap];0.93[JPT][hapmap]
rs11596004	0.82[CHB][hapmap]
rs12262943	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs17111041	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1890187	0.92[ASN][1000 genomes]
rs1933166	0.92[CHB][hapmap];0.93[JPT][hapmap]
rs1933169	0.84[CHB][hapmap]
rs1953710	0.92[CHB][hapmap];0.93[JPT][hapmap]
rs2211002	0.92[CHB][hapmap]
rs2225893	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2275273	0.85[CHB][hapmap]
rs3750700	0.85[CHB][hapmap]
rs3750701	0.85[CHB][hapmap]
rs3793748	1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs3949478	0.85[CHB][hapmap]
rs4290159	0.91[CHB][hapmap]
rs4457685	0.92[CHB][hapmap];0.93[JPT][hapmap]
rs4501930	0.85[CHB][hapmap]
rs473251	0.93[ASN][1000 genomes]
rs476373	0.88[ASN][1000 genomes]
rs482811	0.87[ASN][1000 genomes]
rs4918950	0.92[CHB][hapmap]
rs4918964	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs496426	0.92[CHB][hapmap]
rs497331	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs501603	0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.85[ASN][1000 genomes]
rs524084	0.90[ASN][1000 genomes]
rs556869	0.82[ASN][1000 genomes]
rs6584026	0.92[CHB][hapmap];0.93[JPT][hapmap]
rs7073723	0.92[CHB][hapmap];0.93[JPT][hapmap]
rs7081414	0.92[CHB][hapmap];0.93[JPT][hapmap]
rs7084741	0.86[EUR][1000 genomes]
rs7085059	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7905653	0.92[CHB][hapmap];0.91[JPT][hapmap]
rs7909569	0.92[CHB][hapmap]
rs7918235	1.00[CEU][hapmap];0.92[CHB][hapmap];0.96[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7920850	0.92[CHB][hapmap];0.93[JPT][hapmap]
rs945958	0.92[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97335200-97373400	Weak transcription	Psoas Muscle	Psoas
2	chr10:97335600-97340800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:97339600-97351400	Weak transcription	Placenta	Placenta
4	chr10:97340000-97340800	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr10:97340200-97342600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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