Variant report

Variant	rs476373
Chromosome Location	chr10:97362018-97362019
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10159941	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs10509687	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10748634	0.92[CHB][hapmap]
rs10748635	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10748636	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10748637	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10748639	0.91[EUR][1000 genomes]
rs10748640	0.91[EUR][1000 genomes]
rs10748641	0.91[EUR][1000 genomes]
rs10786228	0.84[CHB][hapmap]
rs10786230	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs10786235	0.87[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10882646	0.92[CHB][hapmap]
rs10882653	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs10882664	0.85[CHB][hapmap]
rs10882665	0.85[CHB][hapmap]
rs1113881	0.89[EUR][1000 genomes]
rs11188414	0.84[CHB][hapmap]
rs11188459	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs11188485	0.92[CHB][hapmap];0.93[JPT][hapmap]
rs11188488	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs11596004	0.82[CHB][hapmap]
rs12262943	0.92[CHB][hapmap];0.87[JPT][hapmap]
rs1340837	0.87[JPT][hapmap]
rs17111041	1.00[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs1890187	0.83[ASN][1000 genomes]
rs1933166	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs1933169	0.84[CHB][hapmap]
rs1933171	0.91[EUR][1000 genomes]
rs1953710	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs2211002	0.92[CHB][hapmap]
rs2225892	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2225893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2225894	0.89[EUR][1000 genomes]
rs2275273	0.85[CHB][hapmap]
rs3750700	0.85[CHB][hapmap]
rs3750701	0.85[CHB][hapmap]
rs3763705	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3763706	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3793748	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3938778	0.84[EUR][1000 genomes]
rs3949478	0.85[CHB][hapmap]
rs4290159	0.91[CHB][hapmap]
rs4457685	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs4501930	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs473251	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs482811	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4917698	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4917700	0.91[EUR][1000 genomes]
rs4917701	0.91[EUR][1000 genomes]
rs4918950	0.92[CHB][hapmap]
rs4918956	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4918958	0.90[EUR][1000 genomes]
rs4918964	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes]
rs496426	0.92[CHB][hapmap]
rs497331	1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs501603	0.93[JPT][hapmap];0.80[YRI][hapmap]
rs524084	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs540963	0.81[AFR][1000 genomes]
rs556869	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs571505	1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs6584014	0.87[EUR][1000 genomes]
rs6584015	0.90[EUR][1000 genomes]
rs6584026	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs6584028	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7069234	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7073723	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs7073936	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7073973	0.83[EUR][1000 genomes]
rs7079911	0.91[EUR][1000 genomes]
rs7080114	0.85[EUR][1000 genomes]
rs7081414	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs7894052	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7905653	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs7909569	0.92[CHB][hapmap]
rs7915345	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7918235	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs7919773	0.89[EUR][1000 genomes]
rs7920850	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs945958	0.92[CHB][hapmap]
rs951418	0.82[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97335200-97373400	Weak transcription	Psoas Muscle	Psoas
2	chr10:97359400-97364600	Weak transcription	Placenta	Placenta
3	chr10:97360000-97364000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:97360200-97364400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:97360200-97364600	Weak transcription	GM12878-XiMat	blood
6	chr10:97360400-97364400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:97360400-97364600	Enhancers	HepG2	liver
8	chr10:97360600-97363200	Weak transcription	Right Ventricle	heart
9	chr10:97360600-97364000	Weak transcription	Right Atrium	heart
10	chr10:97360800-97362600	Enhancers	Fetal Intestine Large	intestine
11	chr10:97360800-97364400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:97360800-97364400	Weak transcription	Fetal Brain Female	brain
13	chr10:97360800-97364800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:97360800-97365000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr10:97360800-97365000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr10:97360800-97366200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr10:97361000-97363800	Weak transcription	Fetal Stomach	stomach
18	chr10:97361000-97364600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:97361000-97364600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:97361000-97364800	Weak transcription	Stomach Mucosa	stomach
21	chr10:97361000-97365000	Weak transcription	Adipose Nuclei	Adipose
22	chr10:97361000-97365000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:97361000-97365000	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr10:97361000-97365200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr10:97361000-97366000	Weak transcription	Hela-S3	cervix
26	chr10:97361000-97366400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr10:97361000-97366800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr10:97361000-97367600	Weak transcription	Fetal Kidney	kidney
29	chr10:97361000-97368200	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr10:97361000-97368400	Weak transcription	Brain Hippocampus Middle	brain
31	chr10:97361200-97363200	Weak transcription	Fetal Muscle Leg	muscle
32	chr10:97361200-97364200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:97361200-97364800	Weak transcription	Brain Anterior Caudate	brain
34	chr10:97361400-97363200	Weak transcription	HSMMtube	muscle
35	chr10:97361400-97363800	Weak transcription	Colon Smooth Muscle	Colon
36	chr10:97361400-97364000	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr10:97361400-97364200	Weak transcription	Fetal Heart	heart
38	chr10:97361400-97364400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr10:97361400-97364400	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr10:97361400-97364400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr10:97361400-97364600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr10:97361400-97365200	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr10:97361400-97365800	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr10:97361400-97366600	Weak transcription	K562	blood
45	chr10:97361600-97362400	Weak transcription	Stomach Smooth Muscle	stomach
46	chr10:97361600-97364000	Weak transcription	Rectal Smooth Muscle	rectum
47	chr10:97361600-97364800	Weak transcription	Osteobl	bone
48	chr10:97361600-97365000	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr10:97361600-97367800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr10:97361800-97362600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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