Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97320460..97323446-chr10:97332611..97334793,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095637	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10159941	0.93[JPT][hapmap]
rs10509687	0.93[JPT][hapmap]
rs10748635	1.00[JPT][hapmap]
rs10748637	0.93[JPT][hapmap]
rs10786230	0.93[JPT][hapmap]
rs10882621	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882653	0.93[JPT][hapmap]
rs11188364	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11188459	0.93[JPT][hapmap]
rs12262943	1.00[JPT][hapmap]
rs17111041	1.00[JPT][hapmap]
rs1933166	0.93[JPT][hapmap]
rs1953710	0.93[JPT][hapmap]
rs2225893	0.93[JPT][hapmap]
rs3793748	0.92[JPT][hapmap]
rs4457685	0.93[JPT][hapmap]
rs4918964	1.00[JPT][hapmap]
rs497331	1.00[JPT][hapmap]
rs571505	0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.85[ASN][1000 genomes]
rs7073723	0.93[JPT][hapmap]
rs7081414	0.93[JPT][hapmap]
rs7905653	0.91[JPT][hapmap]
rs7918235	0.94[CHD][hapmap];0.84[GIH][hapmap];0.93[JPT][hapmap];0.82[MEX][hapmap];0.89[ASN][1000 genomes]
rs7920850	0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs501603	ENTPD1	cis	lymphoblastoid	seeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97332000-97334200	Enhancers	HSMMtube	muscle
2	chr10:97332600-97334200	Weak transcription	Right Atrium	heart
3	chr10:97332600-97334800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr10:97332600-97335200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr10:97332600-97335400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:97332600-97335400	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr10:97333000-97335200	Enhancers	Psoas Muscle	Psoas
8	chr10:97333200-97334200	Bivalent Enhancer	HepG2	liver
9	chr10:97333200-97334800	Enhancers	Left Ventricle	heart
10	chr10:97333200-97336000	Enhancers	Fetal Heart	heart
11	chr10:97333400-97335200	Enhancers	Right Ventricle	heart
12	chr10:97333600-97334400	Enhancers	Skeletal Muscle Female	skeletal muscle

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