Variant report

Variant	rs10882621
Chromosome Location	chr10:97322506-97322507
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SMC3	chr10:97322459-97322557	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97321491..97323159-chr10:97323965..97326308,2	K562	blood:

Variant related genes	Relation type
SORBS1	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11188364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs473251	0.82[ASN][1000 genomes]
rs501603	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs571505	0.88[ASN][1000 genomes]
rs7918235	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv552022	chr10:97308114-97328227	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97321400-97322600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
2	chr10:97321600-97324200	Weak transcription	Left Ventricle	heart
3	chr10:97321600-97324600	Weak transcription	Fetal Lung	lung
4	chr10:97321600-97325400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:97321600-97325600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:97321600-97327400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr10:97321600-97327600	Weak transcription	Right Atrium	heart
8	chr10:97321600-97328000	Weak transcription	Lung	lung
9	chr10:97321600-97329200	Enhancers	Placenta	Placenta
10	chr10:97321600-97332200	Weak transcription	Right Ventricle	heart
11	chr10:97321800-97322600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:97321800-97323000	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr10:97321800-97324600	Weak transcription	Fetal Stomach	stomach
14	chr10:97321800-97325000	Weak transcription	Hela-S3	cervix
15	chr10:97321800-97325400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr10:97321800-97325600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr10:97321800-97325800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr10:97321800-97327800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr10:97321800-97331800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:97321800-97332200	Weak transcription	Brain Anterior Caudate	brain
21	chr10:97322000-97322800	Enhancers	Fetal Brain Female	brain
22	chr10:97322000-97324600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr10:97322000-97327600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr10:97322200-97323400	Enhancers	Fetal Intestine Large	intestine
25	chr10:97322200-97324600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr10:97322400-97322600	Enhancers	Rectal Smooth Muscle	rectum
27	chr10:97322400-97323000	Enhancers	Colon Smooth Muscle	Colon
28	chr10:97322400-97323000	Enhancers	HepG2	liver
29	chr10:97322400-97323200	Enhancers	Fetal Intestine Small	intestine
30	chr10:97322400-97325000	Weak transcription	Fetal Muscle Leg	muscle
31	chr10:97322400-97328200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr10:97322400-97328200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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