Variant report
| Variant | rs473251 |
|---|---|
| Chromosome Location | chr10:97350587-97350588 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10509687 | 0.83[ASN][1000 genomes] |
| rs10748635 | 0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10748636 | 0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10748637 | 0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10882621 | 0.82[ASN][1000 genomes] |
| rs11188364 | 0.82[ASN][1000 genomes] |
| rs17111041 | 0.86[ASN][1000 genomes] |
| rs1890187 | 0.86[ASN][1000 genomes] |
| rs2225892 | 0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2225893 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs3763705 | 0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs3763706 | 0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3793748 | 0.80[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs476373 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs482811 | 0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4917698 | 0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4918956 | 0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs497331 | 0.86[ASN][1000 genomes] |
| rs524084 | 0.96[ASN][1000 genomes] |
| rs556869 | 0.80[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs571505 | 0.93[ASN][1000 genomes] |
| rs7073936 | 0.83[ASN][1000 genomes] |
| rs7894052 | 0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7918235 | 0.82[ASN][1000 genomes] |
| rs7920850 | 0.85[ASN][1000 genomes] |
| rs951418 | 0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv526180 | chr10:97332195-97511037 | Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv948146 | chr10:97350519-97357135 | Weak transcription Enhancers | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:97335200-97373400 | Weak transcription | Psoas Muscle | Psoas |
| 2 | chr10:97339600-97351400 | Weak transcription | Placenta | Placenta |
