Variant report

Variant	rs7918235
Chromosome Location	chr10:97321923-97321924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97321491..97323159-chr10:97323965..97326308,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10159941	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs10509687	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs10748634	0.84[CHB][hapmap]
rs10748635	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs10748637	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs10786228	0.84[CHB][hapmap]
rs10786230	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs10882621	1.00[ASN][1000 genomes]
rs10882646	0.92[CHB][hapmap]
rs10882653	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs11188364	1.00[ASN][1000 genomes]
rs11188414	0.84[CHB][hapmap]
rs11188441	0.93[EUR][1000 genomes]
rs11188459	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs12262943	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.80[EUR][1000 genomes]
rs17111041	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.93[EUR][1000 genomes]
rs1933166	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs1953710	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs2211002	0.84[CHB][hapmap]
rs2225893	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs3793748	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs4290159	0.82[CHB][hapmap]
rs4457685	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs473251	0.82[ASN][1000 genomes]
rs4918950	0.84[CHB][hapmap]
rs4918964	0.84[CHB][hapmap];0.91[JPT][hapmap]
rs496426	0.84[CHB][hapmap]
rs497331	1.00[CEU][hapmap];0.92[CHB][hapmap];0.82[GIH][hapmap];0.93[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs501603	0.94[CHD][hapmap];0.84[GIH][hapmap];0.93[JPT][hapmap];0.82[MEX][hapmap];0.89[ASN][1000 genomes]
rs571505	1.00[CEU][hapmap];0.92[CHB][hapmap];0.96[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7073723	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs7081414	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs7084741	0.80[EUR][1000 genomes]
rs7905653	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs7909569	0.92[CHB][hapmap]
rs7920850	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs945958	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv552022	chr10:97308114-97328227	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97321400-97322400	Enhancers	Small Intestine	intestine
2	chr10:97321400-97322600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
3	chr10:97321600-97322000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:97321600-97322000	Enhancers	Fetal Intestine Large	intestine
5	chr10:97321600-97322000	Flanking Active TSS	Stomach Smooth Muscle	stomach
6	chr10:97321600-97322200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:97321600-97322400	Flanking Active TSS	Colon Smooth Muscle	Colon
8	chr10:97321600-97322400	Enhancers	Fetal Heart	heart
9	chr10:97321600-97322400	Enhancers	Fetal Muscle Leg	muscle
10	chr10:97321600-97322400	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr10:97321600-97322400	Flanking Active TSS	HepG2	liver
12	chr10:97321600-97324200	Weak transcription	Left Ventricle	heart
13	chr10:97321600-97324600	Weak transcription	Fetal Lung	lung
14	chr10:97321600-97325400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:97321600-97325600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr10:97321600-97327400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr10:97321600-97327600	Weak transcription	Right Atrium	heart
18	chr10:97321600-97328000	Weak transcription	Lung	lung
19	chr10:97321600-97329200	Enhancers	Placenta	Placenta
20	chr10:97321600-97332200	Weak transcription	Right Ventricle	heart
21	chr10:97321800-97322000	Enhancers	H9 Cell Line	embryonic stem cell
22	chr10:97321800-97322000	Enhancers	Primary T cells fromperipheralblood	blood
23	chr10:97321800-97322000	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr10:97321800-97322000	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr10:97321800-97322000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr10:97321800-97322000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:97321800-97322000	Weak transcription	Fetal Brain Female	brain
28	chr10:97321800-97322000	Enhancers	Rectal Smooth Muscle	rectum
29	chr10:97321800-97322200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr10:97321800-97322200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr10:97321800-97322200	Enhancers	Fetal Intestine Small	intestine
32	chr10:97321800-97322200	Enhancers	Placenta Amnion	Placenta Amnion
33	chr10:97321800-97322400	Enhancers	H1 Cell Line	embryonic stem cell
34	chr10:97321800-97322400	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr10:97321800-97322400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr10:97321800-97322400	Enhancers	Colonic Mucosa	Colon
37	chr10:97321800-97322400	Enhancers	Duodenum Mucosa	Duodenum
38	chr10:97321800-97322400	Enhancers	K562	blood
39	chr10:97321800-97322600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr10:97321800-97323000	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr10:97321800-97324600	Weak transcription	Fetal Stomach	stomach
42	chr10:97321800-97325000	Weak transcription	Hela-S3	cervix
43	chr10:97321800-97325400	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr10:97321800-97325600	Weak transcription	Brain Cingulate Gyrus	brain
45	chr10:97321800-97325800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr10:97321800-97327800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr10:97321800-97331800	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr10:97321800-97332200	Weak transcription	Brain Anterior Caudate	brain

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