Variant report

Variant	rs11188441
Chromosome Location	chr10:97464047-97464048
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10159941	1.00[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs10509687	0.92[CHB][hapmap];0.91[JPT][hapmap]
rs10748634	0.84[CHB][hapmap]
rs10748635	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs10748636	0.82[ASN][1000 genomes]
rs10748637	1.00[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs10748638	0.86[CHB][hapmap]
rs10748639	0.90[ASN][1000 genomes]
rs10748640	0.90[ASN][1000 genomes]
rs10748641	0.90[ASN][1000 genomes]
rs10786230	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs10786235	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs10786238	0.82[ASN][1000 genomes]
rs10882646	0.83[CHB][hapmap]
rs10882653	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs10882664	0.92[CHB][hapmap]
rs10882665	0.92[CHB][hapmap]
rs10882670	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs1113881	0.90[ASN][1000 genomes]
rs11188459	1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs11188485	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11188488	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12262943	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1340837	0.85[JPT][hapmap]
rs1342791	0.92[CHB][hapmap]
rs17111041	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1890187	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1933166	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1933169	0.92[CHB][hapmap]
rs1933171	0.90[ASN][1000 genomes]
rs1953710	1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs2211002	0.84[CHB][hapmap]
rs2225893	0.92[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs2225894	0.90[ASN][1000 genomes]
rs2861149	0.86[CHB][hapmap]
rs2901873	0.92[CHB][hapmap]
rs3176883	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs3181123	0.92[CHB][hapmap]
rs3763705	0.85[ASN][1000 genomes]
rs3763706	0.82[ASN][1000 genomes]
rs3793748	0.92[CHB][hapmap];0.83[JPT][hapmap]
rs3938778	0.81[ASN][1000 genomes]
rs3949478	0.92[CHB][hapmap]
rs4075311	0.84[JPT][hapmap]
rs4290159	0.82[CHB][hapmap]
rs4457685	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs4501930	0.92[CHB][hapmap]
rs4917698	0.82[ASN][1000 genomes]
rs4917700	0.90[ASN][1000 genomes]
rs4917701	0.89[ASN][1000 genomes]
rs4918950	0.84[CHB][hapmap]
rs4918956	0.82[ASN][1000 genomes]
rs4918958	0.90[ASN][1000 genomes]
rs4918964	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs496426	0.84[CHB][hapmap]
rs497331	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs501603	1.00[JPT][hapmap]
rs571505	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6584014	0.90[ASN][1000 genomes]
rs6584015	0.90[ASN][1000 genomes]
rs6584026	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs6584028	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs6584033	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs7069234	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7073723	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs7073936	0.85[ASN][1000 genomes]
rs7073973	0.90[ASN][1000 genomes]
rs7079911	0.83[ASN][1000 genomes]
rs7081414	1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs7084741	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7085059	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090320	0.82[ASN][1000 genomes]
rs7098750	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7894052	0.82[ASN][1000 genomes]
rs7902190	1.00[CHB][hapmap]
rs7905653	1.00[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs7909569	0.83[CHB][hapmap]
rs7915345	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs7918235	1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];0.93[EUR][1000 genomes]
rs7919773	0.88[ASN][1000 genomes]
rs7920850	1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs945958	0.84[CHB][hapmap]
rs951418	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97458800-97481400	Weak transcription	Primary B cells from cord blood	blood

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