Variant report

Variant	rs10786238
Chromosome Location	chr10:97566321-97566322
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10786235	0.90[ASN][1000 genomes]
rs10882670	0.88[ASN][1000 genomes]
rs11188441	0.82[ASN][1000 genomes]
rs11188470	0.81[ASN][1000 genomes]
rs11188482	0.88[ASN][1000 genomes]
rs11188485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11498722	0.80[ASN][1000 genomes]
rs11528098	0.90[ASN][1000 genomes]
rs12240959	0.90[ASN][1000 genomes]
rs12262943	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2901874	0.85[ASN][1000 genomes]
rs3176883	0.85[ASN][1000 genomes]
rs4409759	0.88[ASN][1000 genomes]
rs497331	0.81[AFR][1000 genomes]
rs60227189	0.88[ASN][1000 genomes]
rs6584026	0.90[ASN][1000 genomes]
rs6584028	0.90[ASN][1000 genomes]
rs6584031	0.90[ASN][1000 genomes]
rs6584033	0.87[ASN][1000 genomes]
rs7069234	0.90[ASN][1000 genomes]
rs7084741	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7085059	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7085594	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7090320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7098750	0.85[ASN][1000 genomes]
rs7100137	0.97[ASN][1000 genomes]
rs7901116	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv895907	chr10:97529318-97686064	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97553000-97576200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:97558800-97566400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr10:97558800-97570600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr10:97566200-97566600	Enhancers	HepG2	liver
5	chr10:97566200-97567000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr10:97566200-97567800	Enhancers	Primary B cells from peripheral blood	blood

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