Variant report

Variant	rs7098750
Chromosome Location	chr10:97631247-97631248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97629567..97631991-chr10:97636103..97637688,2	K562	blood:

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10159941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10748637	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs10748638	0.85[CHB][hapmap]
rs10748639	0.83[ASN][1000 genomes]
rs10748640	0.83[ASN][1000 genomes]
rs10748641	0.83[ASN][1000 genomes]
rs10786230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10786235	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10786238	0.85[ASN][1000 genomes]
rs10882653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10882664	0.92[CHB][hapmap]
rs10882665	0.92[CHB][hapmap]
rs10882670	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882680	0.91[AFR][1000 genomes]
rs10882681	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10882682	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10882683	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10882685	0.85[AMR][1000 genomes]
rs1113881	0.83[ASN][1000 genomes]
rs11188459	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11188468	0.88[EUR][1000 genomes]
rs11188470	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11188482	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188485	1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[YRI][hapmap];0.85[ASN][1000 genomes]
rs11188488	1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs11498722	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11528098	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11819376	0.81[AMR][1000 genomes]
rs12240959	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12262943	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs1340837	0.87[JPT][hapmap];0.92[YRI][hapmap]
rs1342791	0.92[CHB][hapmap]
rs1933166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1933169	0.92[CHB][hapmap]
rs1933171	0.83[ASN][1000 genomes]
rs1953710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2225894	0.83[ASN][1000 genomes]
rs2861149	0.85[CHB][hapmap]
rs2901873	0.92[CHB][hapmap]
rs2901874	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3176883	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3181123	0.92[CHB][hapmap]
rs3763705	0.81[ASN][1000 genomes]
rs3938778	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3949478	0.92[CHB][hapmap]
rs4075311	0.93[JPT][hapmap]
rs4409759	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4457685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4501930	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs4641390	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4917700	0.83[ASN][1000 genomes]
rs4917701	0.82[ASN][1000 genomes]
rs4918958	0.83[ASN][1000 genomes]
rs4918964	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs60227189	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6584014	0.83[ASN][1000 genomes]
rs6584015	0.83[ASN][1000 genomes]
rs6584026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6584028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6584031	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6584033	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7069234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7073723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7073936	0.81[ASN][1000 genomes]
rs7073973	0.83[ASN][1000 genomes]
rs7081414	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7090320	0.85[ASN][1000 genomes]
rs7100137	0.88[ASN][1000 genomes]
rs7893601	0.88[AFR][1000 genomes]
rs7897988	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7901116	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7902190	1.00[CHB][hapmap]
rs7905653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7910565	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7911400	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7912508	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7915345	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7919773	0.86[ASN][1000 genomes]
rs7920850	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs951418	0.82[CEU][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv895907	chr10:97529318-97686064	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97592600-97632800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:97601600-97635600	Weak transcription	Fetal Brain Male	brain
3	chr10:97601800-97635400	Weak transcription	Brain Substantia Nigra	brain
4	chr10:97601800-97647800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:97602400-97655400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:97615400-97634400	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr10:97615800-97633800	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr10:97615800-97634400	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr10:97619400-97633000	Weak transcription	Fetal Brain Female	brain
10	chr10:97619600-97655000	Weak transcription	HUVEC	blood vessel
11	chr10:97619800-97633400	Weak transcription	A549	lung
12	chr10:97620800-97633000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr10:97621000-97640600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr10:97621000-97666800	Weak transcription	Gastric	stomach
15	chr10:97622200-97631800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr10:97622400-97632000	Weak transcription	Lung	lung
17	chr10:97622800-97631600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr10:97622800-97666600	Weak transcription	Thymus	Thymus
19	chr10:97623800-97666600	Weak transcription	Right Ventricle	heart
20	chr10:97624200-97631800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr10:97624600-97632000	Weak transcription	Spleen	Spleen
22	chr10:97624800-97635000	Weak transcription	Small Intestine	intestine
23	chr10:97625000-97631600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:97625000-97631600	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr10:97625000-97632200	Weak transcription	Fetal Lung	lung
26	chr10:97625000-97632800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr10:97625000-97633000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr10:97625000-97633200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr10:97625000-97634200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr10:97625200-97632000	Strong transcription	GM12878-XiMat	blood
31	chr10:97625200-97634200	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr10:97625200-97635800	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr10:97625200-97636800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:97625200-97655200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr10:97625400-97648600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr10:97625400-97649200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr10:97625400-97666400	Weak transcription	Osteobl	bone
38	chr10:97625600-97631400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr10:97625600-97633400	Strong transcription	Primary B cells from peripheral blood	blood
40	chr10:97626000-97633000	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr10:97626000-97633200	Weak transcription	Brain Germinal Matrix	brain
42	chr10:97626000-97637000	Weak transcription	HSMMtube	muscle
43	chr10:97626200-97633000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:97626200-97638000	Weak transcription	Fetal Kidney	kidney
45	chr10:97626400-97666400	Weak transcription	Pancreas	Pancrea
46	chr10:97626600-97631600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr10:97626800-97632800	Weak transcription	Fetal Intestine Large	intestine
48	chr10:97626800-97634000	Weak transcription	Fetal Intestine Small	intestine
49	chr10:97626800-97639600	Weak transcription	HepG2	liver
50	chr10:97626800-97654200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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