Variant report

Variant	rs6584031
Chromosome Location	chr10:97566601-97566602
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10159941	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10748639	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10748640	0.83[ASN][1000 genomes]
rs10748641	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10786230	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10786235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786238	0.90[ASN][1000 genomes]
rs10882653	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10882670	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882681	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10882682	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10882683	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1113881	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11188459	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188468	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11188470	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188482	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11188485	0.90[ASN][1000 genomes]
rs11188488	0.90[ASN][1000 genomes]
rs11498722	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11528098	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12240959	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12262943	0.81[ASN][1000 genomes]
rs1933166	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1933171	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1953710	0.84[ASN][1000 genomes]
rs2225894	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2901874	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3176883	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3938778	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4075311	0.89[AFR][1000 genomes]
rs4409759	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4457685	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4641390	0.84[EUR][1000 genomes]
rs4917700	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4917701	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4918958	0.83[ASN][1000 genomes]
rs4918964	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs60227189	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6584014	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6584015	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6584026	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6584028	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6584033	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7069234	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073723	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7073973	0.83[ASN][1000 genomes]
rs7081414	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7084741	0.81[ASN][1000 genomes]
rs7090320	0.90[ASN][1000 genomes]
rs7098750	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7100137	0.88[ASN][1000 genomes]
rs7897988	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7901116	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7905653	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7910565	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7911400	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7912508	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7919773	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs951418	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv895907	chr10:97529318-97686064	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97553000-97576200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:97558800-97570600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr10:97566200-97567000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:97566200-97567800	Enhancers	Primary B cells from peripheral blood	blood
5	chr10:97566400-97567400	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr10:97566600-97566800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
7	chr10:97566600-97566800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr10:97566600-97567200	Flanking Active TSS	HepG2	liver

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