Variant report

Variant	rs7901116
Chromosome Location	chr10:97570095-97570096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10159941	0.80[AFR][1000 genomes]
rs10748641	0.81[AFR][1000 genomes]
rs10786235	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10786238	0.85[ASN][1000 genomes]
rs10882670	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882681	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10882682	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10882683	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1113881	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11188459	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11188468	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11188470	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11188482	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188485	0.85[ASN][1000 genomes]
rs11188488	0.85[ASN][1000 genomes]
rs11498722	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11528098	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12240959	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1933166	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1933171	0.81[AFR][1000 genomes]
rs2225894	0.81[AFR][1000 genomes]
rs2901874	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3176883	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3938778	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4075311	0.86[AFR][1000 genomes]
rs4409759	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4457685	0.82[EUR][1000 genomes]
rs4641390	0.91[EUR][1000 genomes]
rs4918964	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60227189	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6584014	0.81[AFR][1000 genomes]
rs6584015	0.81[AFR][1000 genomes]
rs6584026	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6584028	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6584031	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6584033	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7069234	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7073723	0.81[AFR][1000 genomes]
rs7081414	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7090320	0.85[ASN][1000 genomes]
rs7098750	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7100137	0.88[ASN][1000 genomes]
rs7897988	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7905653	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7910565	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7911400	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7912508	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7919773	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv895907	chr10:97529318-97686064	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97553000-97576200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:97558800-97570600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr10:97567200-97573200	Weak transcription	Spleen	Spleen
4	chr10:97567200-97573800	Weak transcription	Primary B cells from cord blood	blood
5	chr10:97567400-97573600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr10:97569200-97570200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
7	chr10:97569200-97572000	Weak transcription	HepG2	liver
8	chr10:97569600-97570400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:97569800-97570200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
10	chr10:97569800-97570400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:97569800-97571200	ZNF genes & repeats	GM12878-XiMat	blood
12	chr10:97569800-97572000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:97570000-97570800	Enhancers	Primary B cells from peripheral blood	blood

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