Variant report

Variant	rs10882682
Chromosome Location	chr10:97648919-97648920
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97646629..97649140-chr10:97703482..97706047,2	MCF-7	breast:
2	chr10:97647865..97649455-chr10:97650804..97652890,2	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10159941	0.88[CEU][hapmap]
rs10748650	0.82[ASN][1000 genomes]
rs10786230	0.88[CEU][hapmap]
rs10786235	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10786244	1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs10882653	0.88[CEU][hapmap]
rs10882670	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10882680	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10882681	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882683	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882685	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10882688	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10882692	0.84[JPT][hapmap]
rs10882696	0.84[JPT][hapmap]
rs11188459	0.89[CEU][hapmap]
rs11188468	0.83[EUR][1000 genomes]
rs11188470	0.84[EUR][1000 genomes]
rs11188482	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11188485	0.87[YRI][hapmap]
rs11188518	0.91[CHB][hapmap]
rs11188519	0.82[ASN][1000 genomes]
rs11188520	0.82[ASN][1000 genomes]
rs11188523	1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs11498722	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11528098	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11819376	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12217589	0.84[CHB][hapmap];0.82[ASN][1000 genomes]
rs12240959	0.83[EUR][1000 genomes]
rs1340837	0.92[YRI][hapmap]
rs17111195	0.82[ASN][1000 genomes]
rs1933166	0.88[CEU][hapmap]
rs1953710	0.89[CEU][hapmap]
rs2901874	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3176883	0.88[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34078069	0.82[ASN][1000 genomes]
rs4290160	1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs4409759	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4457685	0.88[CEU][hapmap]
rs4641390	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4918964	1.00[CEU][hapmap]
rs60227189	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6584026	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6584028	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6584031	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6584033	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7069234	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7073723	0.88[CEU][hapmap]
rs7081414	0.89[CEU][hapmap]
rs7085594	0.83[ASN][1000 genomes]
rs7098750	0.89[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7893334	0.84[JPT][hapmap]
rs7893601	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7897988	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7901116	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7902190	0.82[CHB][hapmap]
rs7905653	0.89[CEU][hapmap]
rs7905861	1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs7909097	0.81[ASN][1000 genomes]
rs7909917	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7910565	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7911400	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7912508	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7915345	0.88[CEU][hapmap]
rs7918631	0.82[ASN][1000 genomes]
rs7922216	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv895907	chr10:97529318-97686064	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97602400-97655400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr10:97619600-97655000	Weak transcription	HUVEC	blood vessel
3	chr10:97621000-97666800	Weak transcription	Gastric	stomach
4	chr10:97622800-97666600	Weak transcription	Thymus	Thymus
5	chr10:97623800-97666600	Weak transcription	Right Ventricle	heart
6	chr10:97625200-97655200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:97625400-97649200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:97625400-97666400	Weak transcription	Osteobl	bone
9	chr10:97626400-97666400	Weak transcription	Pancreas	Pancrea
10	chr10:97626800-97654200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr10:97628000-97666800	Weak transcription	Esophagus	oesophagus
12	chr10:97628200-97655600	Weak transcription	Brain Anterior Caudate	brain
13	chr10:97628400-97657600	Weak transcription	Hela-S3	cervix
14	chr10:97629200-97655200	Weak transcription	NH-A	brain
15	chr10:97629200-97663000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:97631200-97663000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr10:97632200-97660400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr10:97632200-97667000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr10:97633200-97655600	Weak transcription	Psoas Muscle	Psoas
20	chr10:97633200-97655800	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr10:97633400-97655200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr10:97633400-97655600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:97633400-97656000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr10:97633400-97659800	Weak transcription	Colon Smooth Muscle	Colon
25	chr10:97633400-97666600	Weak transcription	Brain Angular Gyrus	brain
26	chr10:97633600-97649800	Weak transcription	Adipose Nuclei	Adipose
27	chr10:97633800-97649200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:97633800-97649800	Weak transcription	Left Ventricle	heart
29	chr10:97633800-97666600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr10:97633800-97666600	Weak transcription	Brain Hippocampus Middle	brain
31	chr10:97634000-97663200	Weak transcription	Spleen	Spleen
32	chr10:97634400-97655200	Weak transcription	Fetal Muscle Leg	muscle
33	chr10:97634400-97655200	Weak transcription	Placenta	Placenta
34	chr10:97634400-97655600	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr10:97634400-97659800	Weak transcription	Duodenum Mucosa	Duodenum
36	chr10:97634400-97666800	Weak transcription	Lung	lung
37	chr10:97634600-97655400	Weak transcription	Fetal Muscle Trunk	muscle
38	chr10:97634600-97666400	Weak transcription	Brain Germinal Matrix	brain
39	chr10:97634600-97666800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr10:97634800-97654200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr10:97634800-97667000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr10:97635200-97655200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr10:97635600-97655200	Weak transcription	Fetal Thymus	thymus
44	chr10:97635800-97666600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr10:97636200-97652600	Weak transcription	HMEC	breast
46	chr10:97636200-97655000	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr10:97636200-97655600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr10:97636400-97649800	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr10:97636400-97654400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:97636400-97655200	Weak transcription	Liver	Liver

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