Variant report

Variant	rs10882685
Chromosome Location	chr10:97667422-97667423
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBP	chr10:97666875-97668052	K562	blood:	n/a	n/a
2	SIN3AK20	chr10:97667024-97668122	PANC-1	pancreas:	n/a	n/a
3	CTCF	chr10:97667280-97667430	GM12878	blood:	n/a	n/a
4	POLR2A	chr10:97667294-97668047	MCF-7	breast:	n/a	n/a
5	MYBL2	chr10:97667189-97667945	HepG2	liver:	n/a	n/a
6	RUNX3	chr10:97666693-97668079	GM12878	blood:	n/a	chr10:97667338-97667355
7	POLR2A	chr10:97667406-97667888	HepG2	liver:	n/a	n/a
8	POLR2A	chr10:97667223-97668127	HUVEC	blood vessel:	n/a	n/a
9	CTCF	chr10:97667212-97667472	GM12891	blood:	n/a	n/a
10	CCNT2	chr10:97667220-97667797	K562	blood:	n/a	n/a
11	POLR2A	chr10:97667134-97667890	GM12892	blood:	n/a	n/a
12	CTCF	chr10:97667320-97667470	HPAF	blood vessel:	n/a	n/a
13	POLR2A	chr10:97667135-97668143	HepG2	liver:	n/a	n/a
14	RCOR1	chr10:97666619-97667489	GM12878	blood:	n/a	n/a
15	RCOR1	chr10:97666733-97667985	Hela-S3	cervix:	n/a	n/a
16	CREB1	chr10:97667233-97668091	A549	lung:	n/a	n/a
17	MAX	chr10:97667064-97668104	SK-N-SH	brain:	n/a	chr10:97667305-97667315
18	CTCF	chr10:97666627-97667553	K562	blood:	n/a	n/a
19	CTCF	chr10:97667320-97667470	HA-sp	spinal cord:	n/a	n/a
20	CTCF	chr10:97667271-97667454	MCF-7	breast:	n/a	n/a
21	TAF1	chr10:97666862-97668133	ECC-1	luminal epithelium:	n/a	n/a
22	MAX	chr10:97667082-97668011	HepG2	liver:	n/a	chr10:97667305-97667315
23	YY1	chr10:97667078-97667677	GM12892	blood:	n/a	n/a
24	CTCF	chr10:97667276-97667426	SK-N-SH_RA	brain:	n/a	n/a
25	CTCF	chr10:97667342-97667453	Medullo	brain:	n/a	n/a
26	CTCF	chr10:97667380-97667530	Hela-S3	cervix:	n/a	n/a
27	POLR2A	chr10:97667217-97667962	GM18505	blood:	n/a	n/a
28	PAX5	chr10:97667212-97667991	GM12892	blood:	n/a	n/a
29	CTCF	chr10:97667280-97667430	GM12874	blood:	n/a	n/a
30	MAX	chr10:97666678-97668032	K562	blood:	n/a	chr10:97667305-97667315
31	POLR2A	chr10:97667315-97668086	PANC-1	pancreas:	n/a	n/a
32	POLR2A	chr10:97667392-97667975	A549	lung:	n/a	n/a
33	POLR2A	chr10:97667338-97667855	GM12892	blood:	n/a	n/a
34	POLR2A	chr10:97667234-97668050	A549	lung:	n/a	n/a
35	MAFK	chr10:97666463-97668125	Hela-S3	cervix:	n/a	chr10:97666621-97666637 chr10:97666621-97666636
36	STAT5A	chr10:97666950-97668029	GM12878	blood:	n/a	chr10:97667141-97667148
37	CTCF	chr10:97667280-97667430	HFF	foreskin:	n/a	n/a
38	CTCF	chr10:97667320-97667470	HEEpiC	esophagus:	n/a	n/a
39	CTCF	chr10:97667300-97667450	MCF-7	breast:	n/a	n/a
40	POLR2A	chr10:97667228-97668011	Gliobla	brain:	n/a	n/a
41	SIN3A	chr10:97666827-97668081	H1-hESC	embryonic stem cell:	n/a	chr10:97667387-97667398 chr10:97667653-97667664
42	CTCF	chr10:97666705-97667709	GM12878	blood:	n/a	n/a
43	HDAC2	chr10:97667096-97667579	MCF-7	breast:	n/a	n/a
44	CTCF	chr10:97667320-97667470	HPF	lung:	n/a	n/a
45	CTCF	chr10:97667300-97667450	AoAF	blood vessel:	n/a	n/a
46	CTCF	chr10:97667360-97667510	HPAF	blood vessel:	n/a	n/a
47	MAX	chr10:97666764-97668135	SK-N-SH	brain:	n/a	chr10:97667305-97667315
48	POLR2A	chr10:97667306-97668127	PFSK-1	brain:	n/a	n/a
49	CTCF	chr10:97667185-97667457	HepG2	liver:	n/a	n/a
50	MAX	chr10:97666764-97668115	Hela-S3	cervix:	n/a	chr10:97667305-97667315

No.	Distal block	Cell Line	Cell type
1	chr10:97453551..97454371-chr10:97667064..97668010,2	MCF-7	breast:
2	chr1:28974822..28975547-chr10:97667408..97668176,2	NB4	blood:
3	chr10:97665969..97667709-chr10:97802060..97805145,4	MCF-7	breast:

Variant related genes	Relation type
C10orf131	TF binding region
ENSG00000119977	Chromatin interaction
ENSG00000226688	Chromatin interaction
ENSG00000107443	Chromatin interaction
ENSG00000270103	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10748650	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10786244	0.93[ASN][1000 genomes]
rs10882682	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10882683	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10882688	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188519	0.93[ASN][1000 genomes]
rs11188520	0.93[ASN][1000 genomes]
rs11188523	0.92[ASN][1000 genomes]
rs11819376	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12217589	0.93[ASN][1000 genomes]
rs17111195	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs34078069	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4290160	0.93[ASN][1000 genomes]
rs4641390	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7098750	0.85[AMR][1000 genomes]
rs7897988	0.82[AMR][1000 genomes]
rs7905861	0.93[ASN][1000 genomes]
rs7909097	0.92[ASN][1000 genomes]
rs7910565	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7911400	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7912508	0.85[AMR][1000 genomes]
rs7918631	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9919426	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv895907	chr10:97529318-97686064	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97666400-97668000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:97666400-97668000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:97666400-97668000	Active TSS	Brain Germinal Matrix	brain
4	chr10:97666400-97668000	Active TSS	Fetal Brain Male	brain
5	chr10:97666400-97668000	Active TSS	GM12878-XiMat	blood
6	chr10:97666400-97668200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:97666400-97668200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:97666400-97668200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:97666400-97668200	Active TSS	Aorta	Aorta
10	chr10:97666400-97668200	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr10:97666400-97668200	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr10:97666400-97668200	Active TSS	Right Atrium	heart
13	chr10:97666400-97668400	Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr10:97666400-97668400	Active TSS	HUES64 Cell Line	embryonic stem cell
15	chr10:97666400-97668400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:97666400-97668400	Active TSS	Stomach Smooth Muscle	stomach
17	chr10:97666400-97668400	Active TSS	A549	lung
18	chr10:97666400-97668400	Flanking Bivalent TSS/Enh	Dnd41	blood
19	chr10:97666600-97668000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr10:97666600-97668000	Active TSS	H9 Cell Line	embryonic stem cell
21	chr10:97666600-97668000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:97666600-97668000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:97666600-97668000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:97666600-97668000	Active TSS	Breast Myoepithelial Primary Cells	Breast
25	chr10:97666600-97668000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
26	chr10:97666600-97668000	Active TSS	Primary T killer memory cells from peripheral blood	blood
27	chr10:97666600-97668000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:97666600-97668000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:97666600-97668000	Active TSS	Brain Angular Gyrus	brain
30	chr10:97666600-97668000	Active TSS	Colonic Mucosa	Colon
31	chr10:97666600-97668000	Active TSS	Fetal Heart	heart
32	chr10:97666600-97668000	Active TSS	Fetal Intestine Large	intestine
33	chr10:97666600-97668000	Active TSS	Fetal Intestine Small	intestine
34	chr10:97666600-97668000	Active TSS	Fetal Kidney	kidney
35	chr10:97666600-97668000	Active TSS	Fetal Stomach	stomach
36	chr10:97666600-97668000	Active TSS	Right Ventricle	heart
37	chr10:97666600-97668000	Active TSS	HepG2	liver
38	chr10:97666600-97668000	Active TSS	K562	blood
39	chr10:97666600-97668200	Active TSS	H1 Cell Line	embryonic stem cell
40	chr10:97666600-97668200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr10:97666600-97668200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr10:97666600-97668200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
43	chr10:97666600-97668200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr10:97666600-97668200	Active TSS	Brain Substantia Nigra	brain
45	chr10:97666600-97668200	Active TSS	Rectal Smooth Muscle	rectum
46	chr10:97666600-97668200	Active TSS	Thymus	Thymus
47	chr10:97666600-97668200	Active TSS	HSMM	muscle
48	chr10:97666600-97668200	Active TSS	HSMMtube	muscle
49	chr10:97666600-97668200	Active TSS	NHDF-Ad	bronchial
50	chr10:97666600-97668400	Active TSS	ES-I3 Cell Line	embryonic stem cell

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