Variant report

Variant	rs4641390
Chromosome Location	chr10:97644237-97644238
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10786235	0.86[EUR][1000 genomes]
rs10786244	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10882670	0.91[EUR][1000 genomes]
rs10882680	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10882681	0.95[AFR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882682	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882683	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10882685	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10882688	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10882692	0.84[JPT][hapmap]
rs10882696	0.84[JPT][hapmap]
rs11188468	0.83[EUR][1000 genomes]
rs11188470	0.84[EUR][1000 genomes]
rs11188482	0.86[EUR][1000 genomes]
rs11188485	0.87[YRI][hapmap]
rs11188518	0.91[CHB][hapmap]
rs11188523	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11498722	0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs11528098	0.86[EUR][1000 genomes]
rs11819376	1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12217589	0.84[CHB][hapmap]
rs12240959	0.83[EUR][1000 genomes]
rs1340837	0.92[YRI][hapmap]
rs2901874	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs3176883	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4290160	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs4409759	0.91[EUR][1000 genomes]
rs60227189	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6584026	0.86[EUR][1000 genomes]
rs6584028	0.86[EUR][1000 genomes]
rs6584031	0.84[EUR][1000 genomes]
rs6584033	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7069234	0.86[EUR][1000 genomes]
rs7085594	0.88[ASN][1000 genomes]
rs7098750	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7893334	0.84[JPT][hapmap]
rs7893601	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7897988	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7901116	0.91[EUR][1000 genomes]
rs7902190	0.82[CHB][hapmap]
rs7905861	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs7909917	0.83[ASN][1000 genomes]
rs7910565	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7911400	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7912508	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7922216	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv895907	chr10:97529318-97686064	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97601800-97647800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:97602400-97655400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr10:97619600-97655000	Weak transcription	HUVEC	blood vessel
4	chr10:97621000-97666800	Weak transcription	Gastric	stomach
5	chr10:97622800-97666600	Weak transcription	Thymus	Thymus
6	chr10:97623800-97666600	Weak transcription	Right Ventricle	heart
7	chr10:97625200-97655200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr10:97625400-97648600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr10:97625400-97649200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:97625400-97666400	Weak transcription	Osteobl	bone
11	chr10:97626400-97666400	Weak transcription	Pancreas	Pancrea
12	chr10:97626800-97654200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr10:97628000-97666800	Weak transcription	Esophagus	oesophagus
14	chr10:97628200-97647800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr10:97628200-97655600	Weak transcription	Brain Anterior Caudate	brain
16	chr10:97628400-97657600	Weak transcription	Hela-S3	cervix
17	chr10:97629200-97647800	Weak transcription	NHEK	skin
18	chr10:97629200-97655200	Weak transcription	NH-A	brain
19	chr10:97629200-97663000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:97631200-97663000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr10:97632200-97660400	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr10:97632200-97667000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr10:97633200-97655600	Weak transcription	Psoas Muscle	Psoas
24	chr10:97633200-97655800	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr10:97633400-97648000	Weak transcription	Aorta	Aorta
26	chr10:97633400-97655200	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr10:97633400-97655600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr10:97633400-97656000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr10:97633400-97659800	Weak transcription	Colon Smooth Muscle	Colon
30	chr10:97633400-97666600	Weak transcription	Brain Angular Gyrus	brain
31	chr10:97633600-97649800	Weak transcription	Adipose Nuclei	Adipose
32	chr10:97633800-97649200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:97633800-97649800	Weak transcription	Left Ventricle	heart
34	chr10:97633800-97666600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr10:97633800-97666600	Weak transcription	Brain Hippocampus Middle	brain
36	chr10:97634000-97663200	Weak transcription	Spleen	Spleen
37	chr10:97634400-97655200	Weak transcription	Fetal Muscle Leg	muscle
38	chr10:97634400-97655200	Weak transcription	Placenta	Placenta
39	chr10:97634400-97655600	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr10:97634400-97659800	Weak transcription	Duodenum Mucosa	Duodenum
41	chr10:97634400-97666800	Weak transcription	Lung	lung
42	chr10:97634600-97648400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr10:97634600-97655400	Weak transcription	Fetal Muscle Trunk	muscle
44	chr10:97634600-97666400	Weak transcription	Brain Germinal Matrix	brain
45	chr10:97634600-97666800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr10:97634800-97646400	Weak transcription	Fetal Stomach	stomach
47	chr10:97634800-97654200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr10:97634800-97667000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr10:97635200-97648800	Weak transcription	Fetal Intestine Small	intestine
50	chr10:97635200-97655200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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