Variant report

Variant	rs7909917
Chromosome Location	chr10:97655268-97655269
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97654990..97656934-chr10:97659320..97661534,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10786244	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs10882681	0.82[ASN][1000 genomes]
rs10882682	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10882683	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10882700	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs11188485	0.95[YRI][hapmap]
rs11188518	0.91[CHB][hapmap]
rs11188523	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs11188529	0.82[CHB][hapmap]
rs11819376	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs12217589	0.84[CHB][hapmap]
rs12221469	0.82[CHB][hapmap]
rs1340837	1.00[YRI][hapmap]
rs3176883	0.91[YRI][hapmap]
rs4290160	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4641390	0.83[ASN][1000 genomes]
rs7085594	0.95[ASN][1000 genomes]
rs7098750	0.91[YRI][hapmap]
rs7100137	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7893601	0.86[ASN][1000 genomes]
rs7897988	0.82[ASN][1000 genomes]
rs7902190	0.82[CHB][hapmap]
rs7905861	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs7910565	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7911400	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7912508	0.82[ASN][1000 genomes]
rs9919426	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv895907	chr10:97529318-97686064	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97602400-97655400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr10:97621000-97666800	Weak transcription	Gastric	stomach
3	chr10:97622800-97666600	Weak transcription	Thymus	Thymus
4	chr10:97623800-97666600	Weak transcription	Right Ventricle	heart
5	chr10:97625400-97666400	Weak transcription	Osteobl	bone
6	chr10:97626400-97666400	Weak transcription	Pancreas	Pancrea
7	chr10:97628000-97666800	Weak transcription	Esophagus	oesophagus
8	chr10:97628200-97655600	Weak transcription	Brain Anterior Caudate	brain
9	chr10:97628400-97657600	Weak transcription	Hela-S3	cervix
10	chr10:97629200-97663000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:97631200-97663000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr10:97632200-97660400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:97632200-97667000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr10:97633200-97655600	Weak transcription	Psoas Muscle	Psoas
15	chr10:97633200-97655800	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr10:97633400-97655600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:97633400-97656000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr10:97633400-97659800	Weak transcription	Colon Smooth Muscle	Colon
19	chr10:97633400-97666600	Weak transcription	Brain Angular Gyrus	brain
20	chr10:97633800-97666600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr10:97633800-97666600	Weak transcription	Brain Hippocampus Middle	brain
22	chr10:97634000-97663200	Weak transcription	Spleen	Spleen
23	chr10:97634400-97655600	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr10:97634400-97659800	Weak transcription	Duodenum Mucosa	Duodenum
25	chr10:97634400-97666800	Weak transcription	Lung	lung
26	chr10:97634600-97655400	Weak transcription	Fetal Muscle Trunk	muscle
27	chr10:97634600-97666400	Weak transcription	Brain Germinal Matrix	brain
28	chr10:97634600-97666800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr10:97634800-97667000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr10:97635800-97666600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr10:97636200-97655600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr10:97636400-97655600	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr10:97636400-97656000	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr10:97636400-97662600	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr10:97636400-97666400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr10:97636800-97655400	Weak transcription	Primary B cells from cord blood	blood
37	chr10:97636800-97655600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr10:97636800-97666400	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr10:97638600-97666600	Weak transcription	Colonic Mucosa	Colon
40	chr10:97640000-97656200	Weak transcription	HepG2	liver
41	chr10:97641200-97662800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr10:97642200-97655400	Weak transcription	Primary B cells from peripheral blood	blood
43	chr10:97642200-97655600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr10:97642200-97655600	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr10:97643200-97666600	Weak transcription	Fetal Heart	heart
46	chr10:97644400-97655800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr10:97644600-97661400	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr10:97646600-97666400	Weak transcription	HSMM	muscle
49	chr10:97648000-97662600	Weak transcription	K562	blood
50	chr10:97648000-97666400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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