Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10786244	0.92[JPT][hapmap]
rs10786253	1.00[ASN][1000 genomes]
rs10882691	0.97[ASN][1000 genomes]
rs10882692	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10882695	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10882696	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs10882700	1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs11188523	0.92[JPT][hapmap]
rs11188527	0.97[ASN][1000 genomes]
rs11188529	1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs11527888	0.97[ASN][1000 genomes]
rs11528101	0.97[ASN][1000 genomes]
rs11528102	0.93[ASN][1000 genomes]
rs11819376	0.92[JPT][hapmap]
rs12221469	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12244228	0.97[ASN][1000 genomes]
rs12267027	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12775584	0.87[TSI][hapmap]
rs1360955	0.92[JPT][hapmap]
rs4290160	0.91[JPT][hapmap]
rs4917718	0.92[JPT][hapmap];0.81[YRI][hapmap]
rs7893334	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs7903617	0.92[JPT][hapmap];0.81[YRI][hapmap]
rs7905861	0.83[CHD][hapmap];0.92[JPT][hapmap]
rs7909949	0.97[ASN][1000 genomes]
rs7922059	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761619	chr10:97719520-97746180	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7922216	CPEB3	cis	cerebellum	SCAN
rs7922216	TCTN3	cis	lymphoblastoid	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97720800-97731400	Weak transcription	Left Ventricle	heart
2	chr10:97722800-97729200	Weak transcription	Aorta	Aorta
3	chr10:97725400-97735800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr10:97725400-97736200	Weak transcription	GM12878-XiMat	blood

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