Variant report

Variant	rs7903617
Chromosome Location	chr10:97723721-97723722
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10219061	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10219085	0.91[EUR][1000 genomes]
rs10509696	0.84[CEU][hapmap]
rs10736095	0.91[EUR][1000 genomes]
rs10736096	0.93[CEU][hapmap];0.83[YRI][hapmap]
rs10786249	0.87[EUR][1000 genomes]
rs10786250	0.92[CEU][hapmap];0.94[CHB][hapmap];0.91[EUR][1000 genomes]
rs10882692	0.92[JPT][hapmap]
rs10882695	0.93[JPT][hapmap]
rs10882696	0.92[JPT][hapmap]
rs12221469	0.93[JPT][hapmap]
rs12267027	0.93[JPT][hapmap];0.86[YRI][hapmap]
rs1336458	0.94[EUR][1000 genomes]
rs1360955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027200	0.92[CEU][hapmap];0.94[CHB][hapmap]
rs4290160	0.85[JPT][hapmap]
rs4917718	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918981	0.92[EUR][1000 genomes]
rs4918982	0.92[EUR][1000 genomes]
rs7893334	0.92[JPT][hapmap]
rs7893361	0.96[CEU][hapmap]
rs7904410	0.92[CEU][hapmap];0.94[CHB][hapmap];0.81[YRI][hapmap];0.94[EUR][1000 genomes]
rs7905861	0.85[JPT][hapmap]
rs7907620	0.94[EUR][1000 genomes]
rs7908420	0.96[CEU][hapmap];0.94[CHB][hapmap];0.91[EUR][1000 genomes]
rs7913576	0.90[EUR][1000 genomes]
rs7913608	0.90[EUR][1000 genomes]
rs7921331	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[EUR][1000 genomes]
rs7922059	0.93[JPT][hapmap]
rs7922216	0.92[JPT][hapmap];0.81[YRI][hapmap]
rs9633701	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv2761619	chr10:97719520-97746180	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7903617	ENTPD1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97720800-97731400	Weak transcription	Left Ventricle	heart
2	chr10:97722600-97723800	Enhancers	Primary hematopoietic stem cells	blood
3	chr10:97722600-97725400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr10:97722800-97724600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr10:97722800-97725000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr10:97722800-97725000	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr10:97722800-97729200	Weak transcription	Aorta	Aorta
8	chr10:97723000-97724000	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr10:97723000-97724800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:97723000-97725400	Enhancers	Primary B cells from peripheral blood	blood
11	chr10:97723200-97723800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
12	chr10:97723200-97724000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr10:97723200-97724000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
14	chr10:97723200-97724000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr10:97723200-97724000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
16	chr10:97723200-97724000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:97723200-97724000	Flanking Active TSS	GM12878-XiMat	blood
18	chr10:97723200-97724200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr10:97723200-97724800	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr10:97723400-97723800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
21	chr10:97723400-97723800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr10:97723400-97723800	Bivalent Enhancer	Dnd41	blood
23	chr10:97723400-97724000	Enhancers	Adipose Nuclei	Adipose
24	chr10:97723600-97723800	Enhancers	K562	blood
25	chr10:97723600-97724000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr10:97723600-97724000	Flanking Active TSS	Primary T cells from cord blood	blood
27	chr10:97723600-97724000	Active TSS	Primary T cells fromperipheralblood	blood
28	chr10:97723600-97724400	Flanking Active TSS	Primary B cells from cord blood	blood

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