Variant report

Variant	rs4917718
Chromosome Location	chr10:97717072-97717073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97715075..97717525-chr10:97719176..97721345,2	K562	blood:

Variant related genes	Relation type
ENSG00000269948	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10219061	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10219085	0.90[EUR][1000 genomes]
rs10509696	0.84[CEU][hapmap];0.84[TSI][hapmap]
rs10736095	0.92[EUR][1000 genomes]
rs10736096	0.92[CEU][hapmap];0.81[YRI][hapmap]
rs10786244	0.85[JPT][hapmap]
rs10786249	0.88[EUR][1000 genomes]
rs10786250	0.92[CEU][hapmap];0.94[CHB][hapmap];0.80[CHD][hapmap];0.96[TSI][hapmap];0.92[EUR][1000 genomes]
rs10882690	0.81[CHB][hapmap]
rs10882692	0.92[JPT][hapmap]
rs10882695	0.92[JPT][hapmap]
rs10882696	0.92[JPT][hapmap]
rs11188523	0.85[JPT][hapmap]
rs11819376	0.85[JPT][hapmap]
rs12221469	0.92[JPT][hapmap]
rs12267027	0.92[JPT][hapmap];0.89[YRI][hapmap]
rs1336458	0.93[EUR][1000 genomes]
rs1360955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027200	0.92[CEU][hapmap];0.94[CHB][hapmap];0.96[TSI][hapmap]
rs4290160	0.84[JPT][hapmap]
rs4918981	0.93[EUR][1000 genomes]
rs4918982	0.92[EUR][1000 genomes]
rs7893334	0.92[JPT][hapmap]
rs7893361	0.96[CEU][hapmap]
rs7903617	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7904410	0.92[CEU][hapmap];0.94[CHB][hapmap];0.80[CHD][hapmap];0.96[TSI][hapmap];0.81[YRI][hapmap];0.93[EUR][1000 genomes]
rs7905861	0.85[JPT][hapmap]
rs7907620	0.93[EUR][1000 genomes]
rs7908420	0.96[CEU][hapmap];0.94[CHB][hapmap];0.96[TSI][hapmap];0.92[EUR][1000 genomes]
rs7913576	0.91[EUR][1000 genomes]
rs7913608	0.91[EUR][1000 genomes]
rs7921331	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[EUR][1000 genomes]
rs7922059	0.92[JPT][hapmap]
rs7922216	0.92[JPT][hapmap];0.81[YRI][hapmap]
rs9633701	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4917718	ENTPD1	cis	lymphoblastoid	seeQTL
rs4917718	TCTN3	cis	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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