Variant report

Variant	rs10882670
Chromosome Location	chr10:97573361-97573362
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97572611..97574483-chr10:97578100..97579949,2	K562	blood:

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10159941	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10509687	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs10748634	0.84[CHB][hapmap]
rs10748635	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs10748637	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs10748638	0.86[CHB][hapmap]
rs10748639	0.81[ASN][1000 genomes]
rs10748640	0.81[ASN][1000 genomes]
rs10748641	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10786230	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs10786235	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10786238	0.88[ASN][1000 genomes]
rs10882646	0.83[CHB][hapmap]
rs10882653	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs10882664	0.92[CHB][hapmap]
rs10882665	0.92[CHB][hapmap]
rs10882681	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10882682	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10882683	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1113881	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188459	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11188468	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11188470	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188482	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11188485	1.00[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs11188488	1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs11498722	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11528098	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12240959	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12262943	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs1340837	0.86[JPT][hapmap]
rs1342791	0.92[CHB][hapmap]
rs17111041	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs1933166	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1933169	0.92[CHB][hapmap]
rs1933171	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1953710	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs2211002	0.84[CHB][hapmap]
rs2225893	0.88[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs2225894	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2861149	0.86[CHB][hapmap]
rs2901873	0.92[CHB][hapmap]
rs2901874	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3176883	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3181123	0.92[CHB][hapmap]
rs3793748	0.89[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs3938778	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3949478	0.92[CHB][hapmap]
rs4075311	0.93[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs4290159	0.82[CHB][hapmap]
rs4409759	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4457685	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4501930	0.92[CHB][hapmap];0.85[JPT][hapmap]
rs4641390	0.91[EUR][1000 genomes]
rs4917700	0.81[ASN][1000 genomes]
rs4918950	0.84[CHB][hapmap]
rs4918958	0.81[ASN][1000 genomes]
rs4918964	0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.80[AFR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60227189	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6584014	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6584015	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6584026	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6584028	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6584031	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6584033	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7069234	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7073723	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7073973	0.81[ASN][1000 genomes]
rs7081414	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7090320	0.88[ASN][1000 genomes]
rs7098750	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7100137	0.90[ASN][1000 genomes]
rs7897988	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7901116	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7902190	1.00[CHB][hapmap]
rs7905653	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7909569	0.83[CHB][hapmap]
rs7910565	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7911400	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7912508	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7915345	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7919773	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7920850	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs945958	0.84[CHB][hapmap]
rs951418	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv895907	chr10:97529318-97686064	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97553000-97576200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:97567200-97573800	Weak transcription	Primary B cells from cord blood	blood
3	chr10:97567400-97573600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:97570400-97577600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:97571200-97573800	Genic enhancers	GM12878-XiMat	blood
6	chr10:97572000-97575200	Enhancers	HepG2	liver
7	chr10:97573000-97573800	Enhancers	Brain Cingulate Gyrus	brain
8	chr10:97573000-97574400	Enhancers	NHDF-Ad	bronchial
9	chr10:97573000-97575400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr10:97573000-97575400	Enhancers	Brain Anterior Caudate	brain
11	chr10:97573000-97575800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr10:97573000-97575800	Enhancers	Brain Hippocampus Middle	brain
13	chr10:97573200-97573400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:97573200-97573400	Enhancers	Fetal Muscle Trunk	muscle
15	chr10:97573200-97574000	Enhancers	Esophagus	oesophagus
16	chr10:97573200-97574200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr10:97573200-97574200	Enhancers	Adipose Nuclei	Adipose
18	chr10:97573200-97574200	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr10:97573200-97574400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr10:97573200-97574400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:97573200-97574400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
22	chr10:97573200-97574400	Enhancers	Fetal Muscle Leg	muscle
23	chr10:97573200-97574400	Enhancers	Placenta	Placenta
24	chr10:97573200-97574400	Enhancers	Left Ventricle	heart
25	chr10:97573200-97574400	Enhancers	Lung	lung
26	chr10:97573200-97574400	Enhancers	Spleen	Spleen
27	chr10:97573200-97574600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:97573200-97574800	Enhancers	HMEC	breast
29	chr10:97573200-97574800	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr10:97573200-97575000	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr10:97573200-97575200	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr10:97573200-97575200	Genic enhancers	Primary B cells from peripheral blood	blood
33	chr10:97573200-97575800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr10:97573200-97575800	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr10:97573200-97580000	Enhancers	HUVEC	blood vessel

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