Variant report

Variant	rs3181131
Chromosome Location	chr10:97602091-97602092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:97601411-97602391	GM12878	blood:	n/a	n/a
2	CTCF	chr10:97601575-97602099	IMR90	lung:	n/a	chr10:97601860-97601878 chr10:97601862-97601875 chr10:97601855-97601876 chr10:97601861-97601877
3	CEBPB	chr10:97601559-97602127	HCT-116	colon:	n/a	chr10:97601837-97601848 chr10:97601837-97601850 chr10:97601857-97601868 chr10:97601838-97601849
4	CEBPB	chr10:97601549-97602130	A549	lung:	n/a	chr10:97601837-97601848 chr10:97601837-97601850 chr10:97601857-97601868 chr10:97601838-97601849
5	RAD21	chr10:97601441-97602199	SK-N-SH	brain:	n/a	chr10:97601862-97601876 chr10:97601858-97601877
6	RAD21	chr10:97601568-97602105	A549	lung:	n/a	chr10:97601862-97601876 chr10:97601858-97601877
7	RAD21	chr10:97601607-97602099	A549	lung:	n/a	chr10:97601862-97601876 chr10:97601858-97601877
8	CTCF	chr10:97601459-97602213	HCT-116	colon:	n/a	chr10:97601860-97601878 chr10:97601862-97601875 chr10:97601855-97601876 chr10:97601861-97601877
9	CTCF	chr10:97601549-97602216	A549	lung:	n/a	chr10:97601860-97601878 chr10:97601862-97601875 chr10:97601855-97601876 chr10:97601861-97601877
10	RAD21	chr10:97601639-97602159	HCT-116	colon:	n/a	chr10:97601862-97601876 chr10:97601858-97601877
11	RAD21	chr10:97601555-97602131	HepG2	liver:	n/a	chr10:97601862-97601876 chr10:97601858-97601877
12	CEBPB	chr10:97601522-97602118	HCT-116	colon:	n/a	chr10:97601837-97601848 chr10:97601837-97601850 chr10:97601857-97601868 chr10:97601838-97601849
13	CTCF	chr10:97602060-97602210	HA-sp	spinal cord:	n/a	n/a
14	CTCF	chr10:97601576-97602144	MCF-7	breast:	n/a	chr10:97601860-97601878 chr10:97601862-97601875 chr10:97601855-97601876 chr10:97601861-97601877
15	POLR2A	chr10:97602040-97602472	GM12878	blood:	n/a	n/a
16	RAD21	chr10:97601425-97602158	ECC-1	luminal epithelium:	n/a	chr10:97601862-97601876 chr10:97601858-97601877
17	SMC3	chr10:97601374-97602157	SK-N-SH	brain:	n/a	chr10:97601862-97601876
18	RAD21	chr10:97601486-97602161	HCT-116	colon:	n/a	chr10:97601862-97601876 chr10:97601858-97601877
19	CTCF	chr10:97601697-97602158	HCT-116	colon:	n/a	chr10:97601860-97601878 chr10:97601862-97601875 chr10:97601855-97601876 chr10:97601861-97601877
20	MXI1	chr10:97601728-97602192	GM12878	blood:	n/a	n/a
21	CTCF	chr10:97601457-97602243	SK-N-SH	brain:	n/a	chr10:97601860-97601878 chr10:97601862-97601875 chr10:97601855-97601876 chr10:97601861-97601877
22	GATA2	chr10:97602080-97602284	SH-SY5Y	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:97456008..97456540-chr10:97601464..97602118,2	MCF-7	breast:
2	chr10:97453647..97454478-chr10:97601201..97602348,10	MCF-7	breast:
3	chr10:97598780..97600551-chr10:97601857..97603469,2	K562	blood:
4	chr10:97453473..97454491-chr10:97600756..97602502,23	MCF-7	breast:
5	chr10:97448194..97449375-chr10:97601411..97602625,4	MCF-7	breast:
6	chr10:97453502..97454417-chr10:97601367..97602301,5	K562	blood:

Variant related genes	Relation type
ENTPD1	TF binding region
ENSG00000138185	Chromatin interaction
ENSG00000119977	Chromatin interaction

Extended variants
information (count: 144 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:139)

rs_ID	r²[population]
rs10736092	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10736093	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.84[MEX][hapmap];0.83[MKK][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10736094	0.98[ASN][1000 genomes]
rs10748638	0.89[JPT][hapmap]
rs10748642	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10748643	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.80[YRI][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10748645	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10748647	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748648	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748649	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10786234	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10786236	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10786237	0.80[ASN][1000 genomes]
rs10882646	0.94[JPT][hapmap]
rs10882647	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs10882651	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs10882652	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs10882655	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10882656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10882657	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10882660	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882663	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10882664	0.85[CHD][hapmap];0.94[JPT][hapmap]
rs10882665	0.85[CHD][hapmap];0.94[JPT][hapmap]
rs10882666	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882668	0.87[ASN][1000 genomes]
rs10882669	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10882673	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.80[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882674	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882675	0.89[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];0.84[MEX][hapmap];0.84[MKK][hapmap];0.83[TSI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10882676	0.94[CHB][hapmap];0.89[JPT][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11188414	0.89[JPT][hapmap]
rs11188445	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11188446	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11188449	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188452	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188460	0.88[AMR][1000 genomes]
rs11188465	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11188486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188513	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.98[ASN][1000 genomes]
rs11517041	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12244559	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs1340837	0.94[CHB][hapmap]
rs1342790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1342791	0.85[CHD][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs1418709	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1539433	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1573112	0.89[ASW][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.83[MKK][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1891534	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1933165	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1933169	0.94[JPT][hapmap]
rs1933172	0.84[AMR][1000 genomes]
rs2051052	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.88[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2095713	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2153913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2153914	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2185818	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap];0.95[LWK][hapmap];0.94[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.80[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2211002	0.94[JPT][hapmap]
rs2226163	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2275759	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.94[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2297788	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs2861147	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2861148	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2861149	0.94[JPT][hapmap]
rs2861152	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2901872	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2901873	0.85[CHD][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs3176881	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3176890	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3176891	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3181123	0.85[CHD][hapmap];0.94[JPT][hapmap]
rs3181124	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.84[MEX][hapmap];0.91[MKK][hapmap];0.83[TSI][hapmap];0.83[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3181129	0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs3181132	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3814159	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.84[MEX][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3892344	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3929900	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3934409	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.84[MEX][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3949478	0.85[CHD][hapmap];0.94[JPT][hapmap]
rs4074424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4075310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4075311	0.94[CHB][hapmap]
rs4290159	0.83[JPT][hapmap]
rs4303172	0.81[CHB][hapmap]
rs4322324	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4336961	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4381306	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4396219	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.80[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4412693	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4431963	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.93[TSI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4539246	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4551688	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.80[YRI][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4582902	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.84[MEX][hapmap];0.83[MKK][hapmap];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4614366	0.94[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs4625389	0.91[AMR][1000 genomes]
rs4917705	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4917707	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4917714	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4917715	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918960	0.90[AMR][1000 genomes]
rs4918962	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4918968	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4918969	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4918971	0.84[ASN][1000 genomes]
rs4918973	0.80[ASN][1000 genomes]
rs4918974	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs5014871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6584017	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6584018	0.84[AMR][1000 genomes]
rs6584022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6584023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6584027	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.84[MEX][hapmap];0.83[MKK][hapmap];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6584030	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7067762	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7069030	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7071836	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.80[YRI][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7074403	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7077566	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7082531	0.89[ASN][1000 genomes]
rs7083411	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7083960	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7086986	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7088584	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7088961	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7094382	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7094484	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7095587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7096317	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7097489	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7099844	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7478595	0.84[AMR][1000 genomes]
rs7894648	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs7902190	0.94[JPT][hapmap]
rs7913082	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7914286	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7920801	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs7921242	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9663413	0.82[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv895907	chr10:97529318-97686064	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs3181131	ENTPD1	cis	multi-tissue	Pritchard
rs3181131	UBTD1	cis	cerebellum	SCAN
rs3181131	ALDH18A1	cis	cerebellum	SCAN
rs3181131	ENTPD1	cis	Lymphoblastoid	GTEx
rs3181131	ENTPD1	Cis_1M	lymphoblastoid	RTeQTL
rs3181131	ALDH18A1	Cis_1M	lymphoblastoid	RTeQTL
rs3181131	TCTN3	Cis_1M	lymphoblastoid	RTeQTL
rs3181131	SFRP5	cis	cerebellum	SCAN
rs3181131	MMS19	cis	cerebellum	SCAN
rs3181131	ENTPD1	cis	lymphoblastoid	seeQTL
rs3181131	TCTN3	cis	lymphoblastoid	seeQTL

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97578600-97604400	Weak transcription	Aorta	Aorta
2	chr10:97592000-97602200	Enhancers	Primary B cells from cord blood	blood
3	chr10:97592000-97607200	Weak transcription	Left Ventricle	heart
4	chr10:97592600-97632800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:97594200-97602200	Enhancers	Primary B cells from peripheral blood	blood
6	chr10:97597200-97627200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr10:97597400-97602600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr10:97597400-97604600	Weak transcription	Lung	lung
9	chr10:97597400-97624600	Weak transcription	Placenta	Placenta
10	chr10:97597400-97627400	Weak transcription	Brain Angular Gyrus	brain
11	chr10:97597600-97609600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr10:97597600-97620600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:97598200-97602600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr10:97600200-97602400	Genic enhancers	Primary monocytes fromperipheralblood	blood
15	chr10:97600600-97628600	Weak transcription	Colonic Mucosa	Colon
16	chr10:97601200-97602400	Genic enhancers	Primary neutrophils fromperipheralblood	blood
17	chr10:97601200-97602400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:97601200-97602400	Enhancers	Fetal Kidney	kidney
19	chr10:97601200-97624600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:97601400-97602400	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr10:97601400-97602400	Enhancers	Rectal Smooth Muscle	rectum
22	chr10:97601400-97603000	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr10:97601600-97602400	Enhancers	Adipose Nuclei	Adipose
24	chr10:97601600-97602400	Weak transcription	Fetal Intestine Small	intestine
25	chr10:97601600-97602400	Enhancers	Fetal Muscle Leg	muscle
26	chr10:97601600-97602800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr10:97601600-97602800	Weak transcription	Spleen	Spleen
28	chr10:97601600-97624400	Weak transcription	Fetal Intestine Large	intestine
29	chr10:97601600-97635600	Weak transcription	Fetal Brain Male	brain
30	chr10:97601800-97602200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr10:97601800-97602200	Genic enhancers	Monocytes-CD14+_RO01746	blood
32	chr10:97601800-97602800	Weak transcription	Fetal Stomach	stomach
33	chr10:97601800-97603400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr10:97601800-97604200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr10:97601800-97605200	Weak transcription	Primary hematopoietic stem cells	blood
36	chr10:97601800-97607200	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr10:97601800-97607400	Weak transcription	Brain Anterior Caudate	brain
38	chr10:97601800-97608800	Weak transcription	Colon Smooth Muscle	Colon
39	chr10:97601800-97609200	Strong transcription	GM12878-XiMat	blood
40	chr10:97601800-97624600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr10:97601800-97626000	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr10:97601800-97626400	Weak transcription	Brain Hippocampus Middle	brain
43	chr10:97601800-97627200	Weak transcription	Liver	Liver
44	chr10:97601800-97635400	Weak transcription	Brain Substantia Nigra	brain
45	chr10:97601800-97647800	Weak transcription	Brain Cingulate Gyrus	brain
46	chr10:97602000-97602400	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr10:97602000-97602600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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