Variant report

Variant	rs10882669
Chromosome Location	chr7:6710330-6710331
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:6708183..6710954-chr7:6729478..6731044,2	K562	blood:

Extended variants
information (count: 96 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10736092	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10736093	0.85[ASN][1000 genomes]
rs10736094	0.83[ASN][1000 genomes]
rs10748642	0.83[EUR][1000 genomes]
rs10748643	0.84[EUR][1000 genomes]
rs10748645	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10748647	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10748648	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10748649	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10786234	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10786236	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10882660	0.85[EUR][1000 genomes]
rs10882663	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10882666	0.80[AFR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10882673	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10882674	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10882675	0.85[ASN][1000 genomes]
rs10882676	0.85[ASN][1000 genomes]
rs11188486	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11188497	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11188513	0.83[ASN][1000 genomes]
rs11517041	0.85[ASN][1000 genomes]
rs1342790	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1539433	0.85[EUR][1000 genomes]
rs1573112	0.85[ASN][1000 genomes]
rs1891534	0.83[ASN][1000 genomes]
rs2051052	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2153913	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2153914	0.83[ASN][1000 genomes]
rs2185818	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2226163	0.83[ASN][1000 genomes]
rs2275759	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2861152	0.84[ASN][1000 genomes]
rs2901872	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3176881	0.83[ASN][1000 genomes]
rs3176890	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3176891	0.85[ASN][1000 genomes]
rs3181124	0.83[ASN][1000 genomes]
rs3181131	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3181132	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3892344	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3929900	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4074424	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4075310	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4322324	0.87[EUR][1000 genomes]
rs4336961	0.82[EUR][1000 genomes]
rs4396219	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4412693	0.85[ASN][1000 genomes]
rs4431963	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4539246	0.85[ASN][1000 genomes]
rs4551688	0.87[EUR][1000 genomes]
rs4582902	0.80[ASN][1000 genomes]
rs4917705	0.83[ASN][1000 genomes]
rs4917707	0.83[ASN][1000 genomes]
rs4917714	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4917715	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4918968	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4918969	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4918974	0.86[EUR][1000 genomes]
rs5014871	0.87[EUR][1000 genomes]
rs6584022	0.84[EUR][1000 genomes]
rs6584023	0.84[EUR][1000 genomes]
rs6584027	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6584030	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7069030	0.82[EUR][1000 genomes]
rs7071836	0.84[EUR][1000 genomes]
rs7074403	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7077566	0.84[EUR][1000 genomes]
rs7083411	0.85[EUR][1000 genomes]
rs7083960	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7086986	0.84[EUR][1000 genomes]
rs7088584	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7088961	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7094382	0.81[EUR][1000 genomes]
rs7094484	0.81[EUR][1000 genomes]
rs7096317	0.84[EUR][1000 genomes]
rs7913082	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7914286	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034060	chr7:5814823-6745710	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
2	nsv538711	chr7:5814823-6745710	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
3	nsv949531	chr7:5949371-6753694	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
4	nsv830895	chr7:6514781-6722092	Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	nsv1025220	chr7:6534278-6736802	Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
6	nsv538717	chr7:6534278-6736802	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
7	nsv887432	chr7:6535517-6713985	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
8	nsv887434	chr7:6557135-6713985	Strong transcription Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
9	nsv606002	chr7:6567114-6713985	Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
10	nsv887435	chr7:6613604-6713985	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
11	nsv824002	chr7:6618087-6716961	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
12	nsv824003	chr7:6620920-6721409	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
13	nsv887436	chr7:6626922-6721661	Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
14	nsv606003	chr7:6628242-6713985	Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
15	nsv606006	chr7:6659509-6721661	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
16	esv1803673	chr7:6671496-6721661	Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
17	esv1834684	chr7:6671496-6721661	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
18	nsv1015277	chr7:6705439-7303195	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10882669	ENTPD1	Cis_1M	lymphoblastoid	RTeQTL
rs10882669	TCTN3	Cis_1M	lymphoblastoid	RTeQTL
rs10882669	ALDH18A1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6704400-6712600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr7:6707000-6712800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:6707200-6712800	Weak transcription	Ovary	ovary
4	chr7:6709800-6712000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr7:6709800-6712200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:6709800-6712200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:6709800-6712400	Weak transcription	Fetal Lung	lung
8	chr7:6709800-6712800	Weak transcription	Colon Smooth Muscle	Colon
9	chr7:6710000-6712000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:6710000-6712000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr7:6710000-6712200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:6710000-6712200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr7:6710000-6712200	Weak transcription	Brain Hippocampus Middle	brain
14	chr7:6710000-6712400	Weak transcription	Brain Anterior Caudate	brain
15	chr7:6710200-6710600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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