Variant report

Variant	rs1573112
Chromosome Location	chr10:97593354-97593355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C10orf131-1	chr10:97593265-97593524	ENSG00000240527.1

Extended variants
information (count: 147 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:142)

rs_ID	r²[population]
rs10736092	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10736093	1.00[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10736094	0.98[ASN][1000 genomes]
rs10748638	0.89[JPT][hapmap]
rs10748642	1.00[ASW][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10748643	0.94[ASW][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.91[MKK][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10748645	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10748647	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10748648	0.87[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10748649	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10786234	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10786236	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10786237	0.80[ASN][1000 genomes]
rs10882646	0.94[JPT][hapmap]
rs10882647	0.90[JPT][hapmap]
rs10882651	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs10882652	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs10882655	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10882656	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10882657	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10882659	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10882660	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10882663	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10882664	0.85[CHD][hapmap];0.94[JPT][hapmap]
rs10882665	0.85[CHD][hapmap];0.94[JPT][hapmap]
rs10882666	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10882668	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10882669	0.85[ASN][1000 genomes]
rs10882673	0.87[CHB][hapmap];0.89[JPT][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10882674	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10882675	1.00[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882676	0.96[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188414	0.89[JPT][hapmap]
rs11188445	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11188446	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11188449	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11188452	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11188465	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11188486	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11188495	0.85[AMR][1000 genomes]
rs11188497	0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11188513	0.94[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11517041	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12244124	0.90[JPT][hapmap]
rs12244559	0.88[CHB][hapmap];0.95[JPT][hapmap]
rs1340837	0.87[CHB][hapmap]
rs1342790	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1342791	0.85[CHD][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs1418709	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1539433	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1891534	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1933165	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1933169	0.94[JPT][hapmap]
rs1933172	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2051052	0.89[ASW][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.83[TSI][hapmap];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2095713	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2153913	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2153914	0.94[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2185818	0.89[ASW][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];0.89[LWK][hapmap];0.91[MKK][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2211002	0.94[JPT][hapmap]
rs2226163	0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2275273	0.89[JPT][hapmap]
rs2275759	0.89[ASW][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.83[TSI][hapmap];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2297788	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs2861147	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2861148	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2861149	0.94[JPT][hapmap]
rs2861152	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2901872	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2901873	0.85[CHD][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs3176881	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3176890	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176891	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3181123	0.85[CHD][hapmap];0.94[JPT][hapmap]
rs3181124	0.94[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3181129	0.88[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs3181131	0.89[ASW][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.83[MKK][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3181132	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3793749	0.90[JPT][hapmap]
rs3814159	1.00[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3892344	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3929900	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3934409	1.00[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3949478	0.85[CHD][hapmap];0.94[JPT][hapmap]
rs4074424	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4075310	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4075311	0.87[CHB][hapmap];0.83[TSI][hapmap]
rs4290159	0.83[JPT][hapmap]
rs4322324	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4336961	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4381306	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4396219	0.94[ASW][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.91[MKK][hapmap];0.81[TSI][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4412693	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4431963	0.94[ASW][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.88[MKK][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4539246	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4551688	0.94[ASW][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.91[MKK][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4582902	1.00[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4614366	0.88[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs4625389	0.81[AMR][1000 genomes]
rs4917705	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4917707	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4917714	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4917715	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918962	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4918968	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4918969	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4918971	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4918973	0.80[ASN][1000 genomes]
rs5014871	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6584017	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6584018	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6584022	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6584023	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6584027	1.00[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6584030	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7067762	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs7069030	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7071836	0.94[ASW][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.83[MKK][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7074403	0.89[ASW][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7077566	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7082531	0.89[ASN][1000 genomes]
rs7083411	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7083960	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7086986	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7088584	0.89[ASW][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.83[MKK][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7088961	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7094382	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7094484	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7095587	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7096317	0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7097489	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7099844	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7478595	0.99[AMR][1000 genomes]
rs7894648	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs7902190	0.94[JPT][hapmap]
rs7909569	0.94[JPT][hapmap]
rs7913082	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7914286	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7920801	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs7921242	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs945958	0.94[JPT][hapmap]
rs9663413	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv895907	chr10:97529318-97686064	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1573112	ENTPD1	cis	multi-tissue	Pritchard
rs1573112	ENTPD1	cis	Lymphoblastoid	GTEx
rs1573112	ALDH18A1	Cis_1M	lymphoblastoid	RTeQTL
rs1573112	ENTPD1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97575600-97596600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr10:97575800-97597000	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:97578600-97604400	Weak transcription	Aorta	Aorta
4	chr10:97581000-97600600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:97581200-97596400	Weak transcription	Small Intestine	intestine
6	chr10:97581200-97602000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr10:97582800-97594200	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr10:97583400-97594600	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr10:97584600-97596800	Weak transcription	Brain Angular Gyrus	brain
10	chr10:97586200-97600000	Weak transcription	Fetal Intestine Small	intestine
11	chr10:97590200-97594600	Enhancers	Primary T cells fromperipheralblood	blood
12	chr10:97590200-97598800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr10:97590600-97594400	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr10:97590600-97594800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr10:97590800-97593800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr10:97590800-97594200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:97591200-97593600	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr10:97591400-97596400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr10:97591600-97601000	Weak transcription	Spleen	Spleen
20	chr10:97592000-97593400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr10:97592000-97602200	Enhancers	Primary B cells from cord blood	blood
22	chr10:97592000-97607200	Weak transcription	Left Ventricle	heart
23	chr10:97592200-97593400	Enhancers	Fetal Lung	lung
24	chr10:97592400-97593400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:97592600-97596400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr10:97592600-97596600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr10:97592600-97596800	Weak transcription	Brain Anterior Caudate	brain
28	chr10:97592600-97597000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr10:97592600-97632800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr10:97592800-97593400	Genic enhancers	GM12878-XiMat	blood
31	chr10:97592800-97594200	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr10:97592800-97595200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr10:97592800-97596600	Weak transcription	Brain Cingulate Gyrus	brain
34	chr10:97592800-97600400	Weak transcription	Primary hematopoietic stem cells	blood
35	chr10:97593000-97594200	Genic enhancers	Primary B cells from peripheral blood	blood
36	chr10:97593000-97595600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr10:97593000-97601400	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr10:97593200-97593800	Enhancers	Fetal Stomach	stomach
39	chr10:97593200-97594000	Enhancers	Duodenum Mucosa	Duodenum
40	chr10:97593200-97594200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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