Variant report

Variant	rs10882668
Chromosome Location	chr10:97568884-97568885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10736092	0.87[ASN][1000 genomes]
rs10736093	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10736094	0.85[ASN][1000 genomes]
rs10748645	0.87[ASN][1000 genomes]
rs10748647	0.87[ASN][1000 genomes]
rs10748648	0.87[ASN][1000 genomes]
rs10748649	0.89[ASN][1000 genomes]
rs10786233	0.80[ASN][1000 genomes]
rs10786234	0.85[ASN][1000 genomes]
rs10786236	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10882660	0.80[ASN][1000 genomes]
rs10882663	0.82[ASN][1000 genomes]
rs10882664	0.80[ASN][1000 genomes]
rs10882665	0.80[ASN][1000 genomes]
rs10882666	0.87[ASN][1000 genomes]
rs10882673	0.87[ASN][1000 genomes]
rs10882674	0.87[ASN][1000 genomes]
rs10882675	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10882676	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188486	0.87[ASN][1000 genomes]
rs11188497	0.87[ASN][1000 genomes]
rs11188513	0.85[ASN][1000 genomes]
rs11517041	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1342790	0.87[ASN][1000 genomes]
rs1342791	0.82[ASN][1000 genomes]
rs1418709	0.80[ASN][1000 genomes]
rs1539433	0.80[ASN][1000 genomes]
rs1573112	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1891534	0.85[ASN][1000 genomes]
rs2051052	0.84[ASN][1000 genomes]
rs2153913	0.85[ASN][1000 genomes]
rs2153914	0.85[ASN][1000 genomes]
rs2185818	0.85[ASN][1000 genomes]
rs2226163	0.85[ASN][1000 genomes]
rs2275759	0.85[ASN][1000 genomes]
rs2861152	0.86[ASN][1000 genomes]
rs2901872	0.87[ASN][1000 genomes]
rs2901873	0.82[ASN][1000 genomes]
rs3176881	0.85[ASN][1000 genomes]
rs3176885	0.80[ASN][1000 genomes]
rs3176890	0.87[ASN][1000 genomes]
rs3176891	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3181123	0.80[ASN][1000 genomes]
rs3181124	0.85[ASN][1000 genomes]
rs3181131	0.87[ASN][1000 genomes]
rs3181132	0.87[ASN][1000 genomes]
rs3892344	0.87[ASN][1000 genomes]
rs3929900	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4074424	0.87[ASN][1000 genomes]
rs4075310	0.87[ASN][1000 genomes]
rs4322324	0.82[ASN][1000 genomes]
rs4396219	0.87[ASN][1000 genomes]
rs4412693	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4431963	0.82[ASN][1000 genomes]
rs4539246	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4551688	0.80[ASN][1000 genomes]
rs4582902	0.82[ASN][1000 genomes]
rs4917705	0.84[ASN][1000 genomes]
rs4917707	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4917714	0.87[ASN][1000 genomes]
rs4917715	0.87[ASN][1000 genomes]
rs4918968	0.85[ASN][1000 genomes]
rs4918969	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57126367	0.80[ASN][1000 genomes]
rs6584027	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6584030	0.87[ASN][1000 genomes]
rs7074403	0.85[ASN][1000 genomes]
rs7077566	0.82[ASN][1000 genomes]
rs7083411	0.82[ASN][1000 genomes]
rs7083960	0.87[ASN][1000 genomes]
rs7088584	0.85[ASN][1000 genomes]
rs7088961	0.85[ASN][1000 genomes]
rs7097489	0.80[ASN][1000 genomes]
rs7099844	0.81[AMR][1000 genomes]
rs7902190	0.81[ASN][1000 genomes]
rs7913082	0.87[ASN][1000 genomes]
rs7914286	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv895907	chr10:97529318-97686064	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10882668	ALDH18A1	Cis_1M	lymphoblastoid	RTeQTL
rs10882668	ENTPD1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97553000-97576200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:97558800-97570600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr10:97567000-97569200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr10:97567200-97569200	Enhancers	HepG2	liver
5	chr10:97567200-97573200	Weak transcription	Spleen	Spleen
6	chr10:97567200-97573800	Weak transcription	Primary B cells from cord blood	blood
7	chr10:97567400-97573600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr10:97567800-97570000	Weak transcription	Primary B cells from peripheral blood	blood
9	chr10:97568600-97569800	Weak transcription	GM12878-XiMat	blood

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